Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_J19
(889 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0382 - 22501041-22501279,22501717-22501810 34 0.13
01_01_0083 + 631196-631675 31 1.2
02_05_0686 - 30900748-30902167,30903442-30904742 31 1.6
02_02_0240 + 8196140-8198248,8198381-8198650 30 2.1
07_03_1691 - 28726307-28726323,28726588-28726953,28727483-287275... 29 3.7
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 8.6
09_02_0495 + 9880714-9881196 28 8.6
02_05_0172 + 26460884-26461084,26461168-26461391,26461726-264617... 28 8.6
01_03_0005 + 11568545-11569119,11569179-11569191 28 8.6
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 34.3 bits (75), Expect = 0.13
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 361 PPFFXPPXSRXKGXXXGXXXFFXXPP-PXGGGGXXFGXKXPPPPP 492
P ++ PP S ++ PP P GGG +G K PPPPP
Sbjct: 60 PDYYDPPHSPDYYDPPPSPDYYDPPPSPYYGGGGGYG-KPPPPPP 103
>01_01_0083 + 631196-631675
Length = 159
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +1
Query: 394 KGXXXGXXXFFXXPPPXGGGGXXFGXKXPPPP 489
+G G ++ P GGGG F PPPP
Sbjct: 81 QGGGGGYIPYYQPPAGGGGGGGGFNYPAPPPP 112
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/38 (31%), Positives = 15/38 (39%)
Frame = +1
Query: 370 FXPPXSRXKGXXXGXXXFFXXPPPXGGGGXXFGXKXPP 483
+ PP S ++ PPP GGGG PP
Sbjct: 57 YPPPSSSSSNTPPSSSSYWNYPPPQGGGGGYIPYYQPP 94
Score = 29.5 bits (63), Expect = 3.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 436 PPXGGGGXXFGXKXPPPPP 492
PP GGGG G P PPP
Sbjct: 93 PPAGGGGGGGGFNYPAPPP 111
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 501 PXXRGGGGXFXPKXXPPXPXGGG 433
P +GGGG + P PP GGG
Sbjct: 78 PPPQGGGGGYIPYYQPPAGGGGG 100
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = -3
Query: 467 PKXXPPPPXGGGKXKXXKXPXXXPLXREXGGXKKGGXXPFXPK 339
PK PPPP G P G KKGG P PK
Sbjct: 341 PKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPK 383
>02_02_0240 + 8196140-8198248,8198381-8198650
Length = 792
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -1
Query: 493 PGGGGXFXPQKXPPXPPXGGXXXKXXXPP 407
P G G PQ+ PP PP GG K PP
Sbjct: 11 PDGDGDSHPQQPPPPPPGGG--AKPEPPP 37
>07_03_1691 -
28726307-28726323,28726588-28726953,28727483-28727567,
28728255-28728387,28729793-28730328
Length = 378
Score = 29.5 bits (63), Expect = 3.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 436 PPXGGGGXXFGXKXPPPPP 492
P GGGG G PPPPP
Sbjct: 31 PSCGGGGGGAGPTPPPPPP 49
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 433 PPPXGGGGXXFGXKXPPPPP 492
PPP G F PPPPP
Sbjct: 551 PPPPSGNKPAFSPPPPPPPP 570
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 433 PPPXGGGGXXFGXKXPPPPP 492
PPP G G F PPPPP
Sbjct: 652 PPPAPGIGNKFPAPPPPPPP 671
>09_02_0495 + 9880714-9881196
Length = 160
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 445 GGGGXXFGXKXPPPPP 492
GG G FG PPPPP
Sbjct: 69 GGAGGLFGGTYPPPPP 84
>02_05_0172 +
26460884-26461084,26461168-26461391,26461726-26461756,
26462247-26462834
Length = 347
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2
Query: 780 GGGGGGXPXGXGXVFFXXXRGGGPFXXKAKI 688
GGGGGG G + RGG PF A +
Sbjct: 28 GGGGGGMDRWTGVLNVPLSRGGPPFRVAASL 58
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 777 GGGGGXPXGXGXVFFXXXRGGG 712
GGGGG G G +++ GGG
Sbjct: 99 GGGGGSSTGGGGIYYPPPTGGG 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,665,054
Number of Sequences: 37544
Number of extensions: 348502
Number of successful extensions: 2558
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2240
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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