Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_J19
(889 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 33 0.27
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 33 0.27
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.48
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.48
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.5
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.5
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.5
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 29 3.4
U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical pr... 29 4.4
AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical... 29 4.4
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 7.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 7.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 7.8
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 33.1 bits (72), Expect = 0.27
Identities = 22/68 (32%), Positives = 24/68 (35%)
Frame = +1
Query: 289 FFXXXPPXXXVXXKTFFXGKKGXXPPFFXPPXSRXKGXXXGXXXFFXXPPPXGGGGXXFG 468
FF P F G+ G PPF PP G G F P P G +
Sbjct: 295 FFPPPPRGHFPPPPPHFMGR-GMPPPFMPPPPHFGMGPPRG---FMPPPHPMMFRGGPYP 350
Query: 469 XKXPPPPP 492
PPPPP
Sbjct: 351 PFFPPPPP 358
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 33.1 bits (72), Expect = 0.27
Identities = 22/68 (32%), Positives = 24/68 (35%)
Frame = +1
Query: 289 FFXXXPPXXXVXXKTFFXGKKGXXPPFFXPPXSRXKGXXXGXXXFFXXPPPXGGGGXXFG 468
FF P F G+ G PPF PP G G F P P G +
Sbjct: 295 FFPPPPRGHFPPPPPHFMGR-GMPPPFMPPPPHFGMGPPRG---FMPPPHPMMFRGGPYP 350
Query: 469 XKXPPPPP 492
PPPPP
Sbjct: 351 PFFPPPPP 358
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.3 bits (70), Expect = 0.48
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = +1
Query: 352 GXXPPFFXPPXSRXKGXXXGXXXFFXXPPPXGGGGXXFGXKXPPPPP 492
G PP PP R G G PPP G G PPPPP
Sbjct: 294 GMWPPPPPPPPGRTPGPP-GMPGMPPPPPPSRFGPPGMGGMPPPPPP 339
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.3 bits (70), Expect = 0.48
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = +1
Query: 352 GXXPPFFXPPXSRXKGXXXGXXXFFXXPPPXGGGGXXFGXKXPPPPP 492
G PP PP R G G PPP G G PPPPP
Sbjct: 304 GMWPPPPPPPPGRTPGPP-GMPGMPPPPPPSRFGPPGMGGMPPPPPP 349
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/52 (32%), Positives = 18/52 (34%)
Frame = +1
Query: 337 FXGKKGXXPPFFXPPXSRXKGXXXGXXXFFXXPPPXGGGGXXFGXKXPPPPP 492
F GK+ P PP KG PPP G PPPPP
Sbjct: 225 FRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPP 276
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/52 (32%), Positives = 18/52 (34%)
Frame = +1
Query: 337 FXGKKGXXPPFFXPPXSRXKGXXXGXXXFFXXPPPXGGGGXXFGXKXPPPPP 492
F GK+ P PP KG PPP G PPPPP
Sbjct: 246 FRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPP 297
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/52 (32%), Positives = 18/52 (34%)
Frame = +1
Query: 337 FXGKKGXXPPFFXPPXSRXKGXXXGXXXFFXXPPPXGGGGXXFGXKXPPPPP 492
F GK+ P PP KG PPP G PPPPP
Sbjct: 231 FRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPP 282
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/44 (38%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Frame = -1
Query: 490 GGGGXFX--PQKXPPXPPXGGXXXKXXXPPXXPLWXGKXGXKKR 365
GGGG P PP PP G PP P+ G KKR
Sbjct: 28 GGGGCAPAAPACAPPPPPMCGCAPPPPPPPPPPMCGCGCGRKKR 71
>U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical
protein C16B8.3 protein.
Length = 164
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 434 PPPXGXGGXFLGXKXPPPPRXXGXXFLXPP 523
PPP G G + PPPPR G + PP
Sbjct: 41 PPPVGAGVGYA----PPPPRPYGATYAPPP 66
>AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical
protein Y48G8AL.12 protein.
Length = 78
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 436 PPXGGGGXXFGXKXPPPPP 492
P GGGG G PPPPP
Sbjct: 20 PSAGGGGGGCGCGAPPPPP 38
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 433 PPPXGGGGXXFGXKXPPPPP 492
PPP GG G PPPPP
Sbjct: 729 PPPPGGLPPITGGPPPPPPP 748
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 433 PPPXGGGGXXFGXKXPPPPP 492
PPP GG G PPPPP
Sbjct: 745 PPPPGGLPPISGGPPPPPPP 764
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 433 PPPXGGGGXXFGXKXPPPPP 492
PPP GG G PPPPP
Sbjct: 729 PPPPGGLPPITGGPPPPPPP 748
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 433 PPPXGGGGXXFGXKXPPPPP 492
PPP GG G PPPPP
Sbjct: 745 PPPPGGLPPISGGPPPPPPP 764
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 433 PPPXGGGGXXFGXKXPPPPP 492
PPP GG G PPPPP
Sbjct: 312 PPPPGGLPPITGGPPPPPPP 331
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 433 PPPXGGGGXXFGXKXPPPPP 492
PPP GG G PPPPP
Sbjct: 328 PPPPGGLPPISGGPPPPPPP 347
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,692,151
Number of Sequences: 27780
Number of extensions: 174815
Number of successful extensions: 986
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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