Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_J17
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    28   1.6  
SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr 2|...    27   2.7  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    27   4.8  

>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 493 SRPEQRATFESFETLPNLPSPRYVKSHLPLSCLPPALLDTAKV 621
           +R ++   F+   T   +P P YV+ H P S  P  +LD  ++
Sbjct: 107 ARAKEDPNFQIHSTPSRMP-PHYVQPHPPFSVFPAPILDVREL 148


>SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 222 AGCTLCSISSELNPLPPSQV*FHVENGAPYFFS 124
           A C L S   E   LPP  V    ++G PY+F+
Sbjct: 47  ASCGLTSEDLEAGELPPVDVLTFKKSGKPYYFA 79


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 529 ETLPNLPSPRYVKSHLPLSCLPPALLDT 612
           ET+P+ P P    S LP+   PPA L+T
Sbjct: 197 ETVPSTPQPA---SSLPIPSSPPAALET 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,464,408
Number of Sequences: 5004
Number of extensions: 72377
Number of successful extensions: 205
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)