Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_J16
         (857 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC056668-1|AAH56668.1|  199|Homo sapiens zinc finger, matrin typ...   106   9e-23
AK055683-1|BAB70983.1|  199|Homo sapiens protein ( Homo sapiens ...   106   9e-23

>BC056668-1|AAH56668.1|  199|Homo sapiens zinc finger, matrin type 2
           protein.
          Length = 199

 Score =  106 bits (255), Expect = 9e-23
 Identities = 50/88 (56%), Positives = 59/88 (67%)
 Frame = +1

Query: 217 DHRRKWDKEEFXXXXXXXXXXXXXXXXXXXXXXTPVKRELLKQREYKVDLDSRLGKSVVI 396
           D RRKWDK+E+                       PVKRELL+ R+YKVDL+S+LGK++VI
Sbjct: 11  DFRRKWDKDEYEKLAEKRLTEEREKKDGKPVQ--PVKRELLRHRDYKVDLESKLGKTIVI 68

Query: 397 NKNTPTSQSGGYYCNVCDCVVKDSINFL 480
            K TP S+ GGYYCNVCDCVVKDSINFL
Sbjct: 69  TKTTPQSEMGGYYCNVCDCVVKDSINFL 96



 Score = 65.3 bits (152), Expect = 3e-10
 Identities = 28/34 (82%), Positives = 32/34 (94%)
 Frame = +2

Query: 479 LDHINGKKHQRNLGMSMKIERSSLDQVKARFALN 580
           LDHINGKKHQRNLGMSM++ERS+LDQVK RF +N
Sbjct: 96  LDHINGKKHQRNLGMSMRVERSTLDQVKKRFEVN 129


>AK055683-1|BAB70983.1|  199|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31121 fis, clone IMR322000742, weakly similar to
           HYPOTHETICAL ZINC FINGER PROTEIN ZK686.4 IN CHROMOSOME
           III. ).
          Length = 199

 Score =  106 bits (255), Expect = 9e-23
 Identities = 50/88 (56%), Positives = 59/88 (67%)
 Frame = +1

Query: 217 DHRRKWDKEEFXXXXXXXXXXXXXXXXXXXXXXTPVKRELLKQREYKVDLDSRLGKSVVI 396
           D RRKWDK+E+                       PVKRELL+ R+YKVDL+S+LGK++VI
Sbjct: 11  DFRRKWDKDEYEKLAEKRLTEEREKKDGKPVQ--PVKRELLRHRDYKVDLESKLGKTIVI 68

Query: 397 NKNTPTSQSGGYYCNVCDCVVKDSINFL 480
            K TP S+ GGYYCNVCDCVVKDSINFL
Sbjct: 69  TKTTPQSEMGGYYCNVCDCVVKDSINFL 96



 Score = 65.3 bits (152), Expect = 3e-10
 Identities = 28/34 (82%), Positives = 32/34 (94%)
 Frame = +2

Query: 479 LDHINGKKHQRNLGMSMKIERSSLDQVKARFALN 580
           LDHINGKKHQRNLGMSM++ERS+LDQVK RF +N
Sbjct: 96  LDHINGKKHQRNLGMSMRVERSTLDQVKKRFEVN 129


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,374,164
Number of Sequences: 237096
Number of extensions: 1670790
Number of successful extensions: 6358
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6356
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10928473528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)