Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_J16
         (857 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L17337-4|ABM74561.1|  217|Caenorhabditis elegans Hypothetical pr...    96   3e-20

>L17337-4|ABM74561.1|  217|Caenorhabditis elegans Hypothetical
           protein ZK686.4 protein.
          Length = 217

 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 46/92 (50%), Positives = 60/92 (65%), Gaps = 4/92 (4%)
 Frame = +1

Query: 217 DHRRKWDKEEFXXXXXXXXXXXXXXXXXXXXXXTP----VKRELLKQREYKVDLDSRLGK 384
           +HRR WD++E+                            VKRE+L+ REYKVDLDS++GK
Sbjct: 15  NHRRTWDEKEYSLAAQQRLLDEKEAEDIRLGKKKKDEPKVKREMLQAREYKVDLDSKVGK 74

Query: 385 SVVINKNTPTSQSGGYYCNVCDCVVKDSINFL 480
           SVVI K TP++++GG+YC+VCDCVVKDSINFL
Sbjct: 75  SVVITKATPSAETGGFYCDVCDCVVKDSINFL 106



 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 21/33 (63%), Positives = 27/33 (81%)
 Frame = +2

Query: 479 LDHINGKKHQRNLGMSMKIERSSLDQVKARFAL 577
           LDHINGK HQRN+GMSMK ++S++  V+ RF L
Sbjct: 106 LDHINGKNHQRNIGMSMKTKKSTVADVRERFKL 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,119,946
Number of Sequences: 27780
Number of extensions: 263367
Number of successful extensions: 525
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)