Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_J08
         (890 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   0.93 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   0.93 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   0.93 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   2.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   2.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   8.6  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 589 SSPPREFRYFCPPG 548
           S  P ++RYFCP G
Sbjct: 276 SENPADYRYFCPDG 289


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 589 SSPPREFRYFCPPG 548
           S  P ++RYFCP G
Sbjct: 276 SENPADYRYFCPDG 289


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 589 SSPPREFRYFCPPG 548
           S  P ++RYFCP G
Sbjct: 276 SENPADYRYFCPDG 289


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 870 YRKEXSFYKNFKTESXILHELLFYY 796
           Y K+   Y N K ES  + +L+ Y+
Sbjct: 439 YNKDEIIYPNLKIESFTVDKLITYF 463


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 870 YRKEXSFYKNFKTESXILHELLFYY 796
           Y K+   Y N K ES  + +L+ Y+
Sbjct: 439 YNKDEIIYPNLKIESFTVDKLITYF 463


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 20/62 (32%), Positives = 26/62 (41%)
 Frame = +3

Query: 141 TVTILRKKPPKASALKTEQAVNAARRQGIPVDTQQKYGAGTNKQHVTTKNTAKLDRETEE 320
           T TI   K  KA  + +      ARR+GI +       A       TT + A LDR  E 
Sbjct: 479 TGTISANKASKAFGIPSSTLYKIARREGIRL-------AAPFNASPTTWSPADLDRALEA 531

Query: 321 LR 326
           +R
Sbjct: 532 IR 533


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 34  ESLRFXVRLKTFKTNNNTLVLFYHTSDLRSTCLTGIQL 147
           ++LR    LKT     N +  FY+ S      LTG++L
Sbjct: 448 DALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRL 485


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -1

Query: 560 LSARRLQWLA--SFFSTKFYSNCPFNFSK 480
           ++A    WL+  SFF   F+  CP  F +
Sbjct: 409 VNAGMWMWLSCSSFFQQFFHCYCPVRFGR 437


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,070
Number of Sequences: 438
Number of extensions: 4791
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)