Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_J07
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit ...   147   2e-36
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    29   0.84 
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    28   1.5  
SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc...    26   7.9  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    26   7.9  

>SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit
           Apc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score =  147 bits (356), Expect = 2e-36
 Identities = 67/163 (41%), Positives = 109/163 (66%), Gaps = 7/163 (4%)
 Frame = +1

Query: 154 MAGLEKDPLVYERSGTVR------EVGNHAIWSLSSCKPGFGIDQLRDDCMETYWQSDGQ 315
           MA + ++ L  ++S T +      ++GN A W+ SS K GF I  +RDD ++TYWQSDG 
Sbjct: 1   MAQIRQEALKKQKSETQKSTEGFVDIGNLAQWTCSSEKSGFPIRLVRDDNIDTYWQSDGS 60

Query: 316 LPHLVNIQFQKKTMVSHIYIYTDYKLDESYTPSRISIRAGTHFNDLQEIEVIELIEPSGW 495
            PH ++I+F K+  + ++ +Y  Y LDESYTPS + I AGT F DL+ +  +++ EP+GW
Sbjct: 61  QPHTIHIKFVKRVSIKYVSMYLQYTLDESYTPSTLRISAGTGFQDLEIVTTVQVEEPTGW 120

Query: 496 EMIPIKDI-HDRPIRTYMIQIAVLSNHQNGRDTHMRQIKVHSP 621
             +P+ D   +  +  ++IQI +L+NHQ+G+D+H+R IK+++P
Sbjct: 121 VHVPVGDFGRNGLLDVHLIQIKILANHQSGKDSHVRLIKIYAP 163


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 349 KTMVSHIYIYTDYKLDESYTPSRISIRAGTHFNDLQEIEVIELIEPSG 492
           K  ++HI  Y DY +   +   + S+R   HF+  Q+  +I L E +G
Sbjct: 274 KEKLTHIIKYDDYLVHLVHETLQYSVRLEQHFHYTQDPLIIFLFEQNG 321


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 445 NDLQEIEVIELIEPSGWEMIPIKDIHD 525
           +D +EI+  E+ E S WEMI  +D  D
Sbjct: 692 DDFEEIDTDEIEEQSDWEMISNQDASD 718


>SPBC3B9.06c |apg3||autophagy associated protein Apg3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 275

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 310 HQT-ASMFPCSHLSIDQYQILVYRKTNSR*HDYRLLVLFLIF 188
           H T AS+ PC H S+    I  +R+ N      + +VLFL F
Sbjct: 218 HNTMASVHPCKHASVLLKLIKQHRERNDPIRVDQYMVLFLKF 259


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 532 IRTYMIQIAVLSNHQNGRDTHMRQIKVHSPCEPTSFDINK 651
           I T +I  AVLS+H       + + KV   C+P S  + K
Sbjct: 260 IETLLINEAVLSSHLPKIAETLTEAKVTLKCDPASLKVLK 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,795,211
Number of Sequences: 5004
Number of extensions: 57494
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)