Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_J07
         (857 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0246 + 28634530-28634735,28634841-28634901,28634996-286350...   165   3e-41

>05_07_0246 +
           28634530-28634735,28634841-28634901,28634996-28635088,
           28635326-28635391,28635506-28635576,28636225-28636329,
           28637065-28637134
          Length = 223

 Score =  165 bits (402), Expect = 3e-41
 Identities = 89/187 (47%), Positives = 117/187 (62%), Gaps = 30/187 (16%)
 Frame = +1

Query: 202 VREVGNHAIWSLSSCKPGFGIDQLRDDCMETYWQSDGQLPHLVNIQFQKKTMVSHIYIYT 381
           +RE+   A WS+SSCKPG G+  LRDD ++TYWQSDG  PHLVNIQFQKK  +  + +Y 
Sbjct: 36  MREMAKTAAWSVSSCKPGNGVASLRDDNLDTYWQSDGAQPHLVNIQFQKKVQLQLVVVYV 95

Query: 382 DYKLDESYTPSRISIRAGTHFNDLQ----------------------EIEVIELIEPSGW 495
           D+KLDESYTPS+IS+RAG  F++L+                      EI+ +EL +P GW
Sbjct: 96  DFKLDESYTPSKISVRAGDGFHNLKEYIDIRLGRTGKLWQDFVSVNMEIKTVELSKPVGW 155

Query: 496 EMIPIK--DIHDRPIRTYMIQIAVLSNHQNGRDTHMRQIKV------HSPCEPTSFDINK 651
             I +   D  +  I T+M+QI+VLSNH NGRDTH+RQIK+      H P +P  F   +
Sbjct: 156 VHISLSGADPRETFIHTFMLQISVLSNHLNGRDTHIRQIKIYGPRPNHVPHQPFHFTSRE 215

Query: 652 FRNFSTV 672
           F  +STV
Sbjct: 216 FVTYSTV 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,453,226
Number of Sequences: 37544
Number of extensions: 313247
Number of successful extensions: 699
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)