Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_J04
(856 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 48 2e-06
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 40 4e-04
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 33 0.039
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 33 0.052
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 32 0.090
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 32 0.090
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 30 0.36
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 30 0.48
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 29 0.84
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 29 1.1
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 28 1.5
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 28 1.5
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 28 1.5
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 28 1.5
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 28 1.5
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual 28 1.5
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 28 1.9
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 28 1.9
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 27 2.6
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 27 2.6
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 27 2.6
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 27 2.6
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 27 3.4
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 27 3.4
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 26 5.9
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 26 7.8
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 26 7.8
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ... 26 7.8
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 26 7.8
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 26 7.8
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 26 7.8
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 26 7.8
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb... 26 7.8
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 26 7.8
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 26 7.8
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 48.0 bits (109), Expect = 2e-06
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = +2
Query: 533 QRKQLLRNVNGAAYPGELLAIMGSSGAGKTTLLNTLTFR 649
+ ++LL V G PG+L A+MG SGAGKTTLLN L R
Sbjct: 896 EHRRLLNGVQGFVVPGKLTALMGESGAGKTTLLNVLAQR 934
Score = 29.5 bits (63), Expect = 0.64
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 539 KQLLRNVNGAAYPGELLAIMGSSGAGKTTLLNTLTFRT 652
K +L + + A GEL+ ++G G+G +T L ++T T
Sbjct: 174 KAILSHCHALANAGELVMVLGQPGSGCSTFLRSVTSDT 211
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 39.9 bits (89), Expect = 4e-04
Identities = 15/38 (39%), Positives = 27/38 (71%)
Frame = +2
Query: 527 FQQRKQLLRNVNGAAYPGELLAIMGSSGAGKTTLLNTL 640
+ RK +L ++N A PG+++A++G SG GK+T++ L
Sbjct: 593 YDPRKPVLSDINFVAQPGKVIALVGESGGGKSTIMRIL 630
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 33.5 bits (73), Expect = 0.039
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +2
Query: 512 SSDRMFQQRKQLLRNVNGAAYPGELLAIMGSSGAGKTTLL 631
S + QQ LR +N A GEL I G GAGK++LL
Sbjct: 585 SKKTLKQQVTPTLRQINFVAKNGELTCIFGKVGAGKSSLL 624
Score = 29.9 bits (64), Expect = 0.48
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 548 LRNVNGAAYPGELLAIMGSSGAGKTTLLNTL 640
L N+N P E + I+G +GAGK+TL L
Sbjct: 1243 LNNINIEISPREKIGIVGRTGAGKSTLAMAL 1273
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 33.1 bits (72), Expect = 0.052
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 542 QLLRNVNGAAYPGELLAIMGSSGAGKTTLLNTL 640
++LR +N PG+ +A +GSSG GK+T + +
Sbjct: 1135 KVLRGLNLTVKPGQFVAFVGSSGCGKSTTIGLI 1167
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 32.3 bits (70), Expect = 0.090
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +2
Query: 539 KQLLRNVNGAAYPGELLAIMGSSGAGKTTLL 631
+++L ++N GE A+ GS+G+GKTTLL
Sbjct: 277 RKVLSDINWTIREGERWALTGSNGSGKTTLL 307
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 32.3 bits (70), Expect = 0.090
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +2
Query: 536 RKQLLRNVNGAAYPGELLAIMGSSGAGKTTLLNTLTFR 649
+KQ+L NV+G L A++G + +GK+ LL L+ R
Sbjct: 773 KKQILTNVSGYLKKNTLTALLGENKSGKSVLLRILSQR 810
Score = 29.1 bits (62), Expect = 0.84
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 545 LLRNVNGAAYPGELLAIMGSSGAGKTTLLNTL 640
L++ +G PG L ++G G+G +TLL L
Sbjct: 91 LVKGFDGYLQPGSSLLVLGHEGSGGSTLLKAL 122
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 30.3 bits (65), Expect = 0.36
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +2
Query: 545 LLRNVNGAAYPGELLAIMGSSGAGKTTLLNTL 640
+L++VN P E +A++G +G+GK+TL TL
Sbjct: 1228 ILKDVNLHINPSEKVAVVGRTGSGKSTLGLTL 1259
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 29.9 bits (64), Expect = 0.48
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -1
Query: 424 FNTSDGSVVAILRYGHSDFTDT*SWRVIWRLTILWGVVVCYALI 293
F+T V A + G T SWR + + +LWG+++ ++
Sbjct: 154 FSTGAALVAACINMGTHKLRKTASWRTSFGINMLWGILLMVGVL 197
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 29.1 bits (62), Expect = 0.84
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 509 NSSDRMFQQRKQLLRNVNGAAYPGELLAIMGSSGAGKTTLLNTL 640
N+S +K+ L NV +AI+G +GAGK+TL+ L
Sbjct: 696 NASYTYPNAKKKSLDNVTVGLSLSSRVAILGPNGAGKSTLIKVL 739
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 545 LLRNVNGAAYPGELLAIMGSSGAGKTTLLNTL 640
LL + N Y G ++G +G GK+TLL +
Sbjct: 459 LLSHTNLHLYRGHRYGVVGHNGCGKSTLLRAI 490
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = -1
Query: 424 FNTSDGSVVAILRYGHSDFTDT*SWRVIWRLTILWGVVVCYALI 293
F T + A + G T SWR + + ILWG+ + ++
Sbjct: 154 FQTCGTLIAACINMGTHKLRKTASWRTSFGINILWGIFLMVGVL 197
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +2
Query: 587 LAIMGSSGAGKTTLLNTLT 643
+AI+G +G GK+TLLN +T
Sbjct: 419 VAIVGKNGTGKSTLLNLIT 437
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 548 LRNVNGAAYPGELLAIMGSSGAGKTTLL 631
LR+++ A GEL I+G G GK++LL
Sbjct: 599 LRDIDFVARRGELCCIVGKVGMGKSSLL 626
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +2
Query: 575 PGELLAIMGSSGAGKTTLLNTLT 643
PG++L ++G++G GK+T L L+
Sbjct: 102 PGQVLGLVGTNGIGKSTALKILS 124
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 509 NSSDRMFQQRKQLLRNVNGAAYPGELLAIMGSSGAGKTT 625
N D + +Q L +G E++ ++G +G GKTT
Sbjct: 352 NYPDHVIEQGDFKLTIKSGGFSDAEIIVLLGENGTGKTT 390
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +2
Query: 593 IMGSSGAGKTTLLNTLTFR 649
++G SG+GK+TL+NTL R
Sbjct: 100 VLGESGSGKSTLVNTLLNR 118
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 584 LLAIMGSSGAGKTTLLNTLTFRTPG 658
L I+G +G+GKTT++ L + T G
Sbjct: 29 LTLIVGQNGSGKTTIIECLKYATTG 53
>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 35 IP*DFVGHRSVASQHSRAVA*PAHFPPN 118
IP + VGH S++S +S A A P+ PPN
Sbjct: 60 IPMENVGHISLSSANSHAYAPPSGPPPN 87
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 569 AYPGELLAIMGSSGAGKTTLLNTLTFR 649
A P ++A+MG G GK+TL+ +L R
Sbjct: 71 APPPVIVAVMGPPGTGKSTLIKSLVRR 97
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 442 GRCQRIRHRVQIERKKVLELLEKFFGS 522
GR R++H VQ + K LE L+ FF S
Sbjct: 317 GRVVRVQHAVQQDVKLALENLQDFFSS 343
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 533 QRKQLLRNVNGAAYPGELLAIMGSSGAGKTTLLNTL 640
QR +++ NG A+ L + G SG GKTT NTL
Sbjct: 17 QRHKIVSR-NGVAFT---LMLCGESGLGKTTFCNTL 48
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +2
Query: 578 GELLAIMGSSGAGKTTLLNTL 640
GEL+ I+G SG+GK+T ++ L
Sbjct: 462 GELVHIIGPSGSGKSTFISLL 482
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 566 AAYPGELLAIMGSSGAGKTTLLNTL 640
A + ++A++GS GK+TLLN L
Sbjct: 35 AGFNYHVVAVLGSQSTGKSTLLNNL 59
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 27.5 bits (58), Expect = 2.6
Identities = 10/16 (62%), Positives = 15/16 (93%)
Frame = +2
Query: 593 IMGSSGAGKTTLLNTL 640
++G SG+GK+TL+NTL
Sbjct: 37 VVGPSGSGKSTLINTL 52
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 578 GELLAIMGSSGAGKTTLLNTL 640
G + + G+SG GKTT NTL
Sbjct: 30 GLTIMLCGASGTGKTTFFNTL 50
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 524 MFQQRKQLLRNVNGAAYPGELLAIMGSSGAGKTT 625
+F+ RKQ L V+ ++L ++G +G+GKTT
Sbjct: 512 VFKLRKQFLEAVS----KNQILVLLGETGSGKTT 541
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 26.2 bits (55), Expect = 5.9
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = -3
Query: 176 HTHTHSTRLLLVTSQFFYFDLAGNVQVRQRRASAAMPQSDVQQNLKEFPIVRSV 15
H H ST L V S F G+ R+ S +PQS + L E +V +
Sbjct: 256 HRHRRSTGSLSVGSSGSGFSSGGSGNPRKNLFSPYLPQSSIPALLAERRLVTGI 309
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +3
Query: 291 IISA*HTTTPHRMVKRQMTRHDQVSVKSLWPY 386
+IS TTP + R RH Q V L PY
Sbjct: 384 LISVIPPTTPQIYISRTPVRHTQFDVNFLSPY 415
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/44 (25%), Positives = 19/44 (43%)
Frame = -1
Query: 424 FNTSDGSVVAILRYGHSDFTDT*SWRVIWRLTILWGVVVCYALI 293
F T + A + G T WRV + +LWG++ ++
Sbjct: 158 FVTGGIFIAACINMGTHKLHKTAQWRVSIGINLLWGIITMIGIL 201
>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = -1
Query: 403 VVAILRYGHSDFTDT*SWRVIWRLTILWGVVV 308
+ A + G T WRV + +LWG+++
Sbjct: 161 IAACINMGTHKLHKTAQWRVSMGINLLWGIIM 192
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 548 LRNVNGAAYPGELLAIMGSSGAGKTTLLNTL 640
L+N+N + ++GS+G+GK+TL L
Sbjct: 597 LKNLNFTIPRNQFTLVVGSTGSGKSTLAMAL 627
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 7.8
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 388 SKSQLRSHRRY*KSYLHVGRCQRIRHRVQIERKKVLELLEKFFGSHVP 531
S ++L+ Y +S L G H +QI+ K++LE++ GS VP
Sbjct: 307 SDAELKEISDYVESSLRDGSFILEAH-IQIDYKRILEIIIDHLGSSVP 353
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 587 LAIMGSSGAGKTTLLNTLTFR 649
+AI+G S AGK++L+N L R
Sbjct: 242 VAILGPSNAGKSSLINLLANR 262
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 587 LAIMGSSGAGKTTLLNTLT 643
+ I+G AGKT+LLN T
Sbjct: 16 IVILGDGAAGKTSLLNVFT 34
>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 386
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 266 EPLISTSVDNQRVTYNNSPQDGQ 334
EPL + S+ N + ++ SP DGQ
Sbjct: 199 EPLDTPSLSNSQERFSKSPSDGQ 221
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 7.8
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +3
Query: 312 TTPHRMVKRQMTRHDQVSVKSLWPYLKIATTEPSEVLKKLLTRGPMSTHSPQSPDREE 485
+TP+R V + S + P I + P +VL KL + SP+ DR+E
Sbjct: 278 STPNRKVSQPSDFSASPSRSIVSPAKNIVGSTPVDVLSKLTPEFHTALSSPKWKDRKE 335
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 548 LRNVNGAAYPGELLAIMGSSGAGKTT 625
L +NGAA+ G+ LAI GA T
Sbjct: 89 LNGLNGAAFAGDHLAIRRVDGASNVT 114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,619,103
Number of Sequences: 5004
Number of extensions: 76231
Number of successful extensions: 334
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -