Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_J04
         (856 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.89 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.89 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   4.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   8.3  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 19/57 (33%), Positives = 24/57 (42%)
 Frame = -3

Query: 317 SCCMLRADYQPKLILGALVLRFRQSFLMLITKLNYNNINHTIKLMISHTHTHSTRLL 147
           S     +D    +I G L + F  SFL   TKL     +HT  +  S    H  RLL
Sbjct: 5   SVLQAESDVSSCVIFGVLFVLF--SFLRTRTKLQPTYFHHTYIIYESLCGRHEKRLL 59


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 19/57 (33%), Positives = 24/57 (42%)
 Frame = -3

Query: 317 SCCMLRADYQPKLILGALVLRFRQSFLMLITKLNYNNINHTIKLMISHTHTHSTRLL 147
           S     +D    +I G L + F  SFL   TKL     +HT  +  S    H  RLL
Sbjct: 5   SVLQAESDVSSCVIFGVLFVLF--SFLRTRTKLQPTYFHHTYIIYESLCGRHEKRLL 59


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 584 LLAIMGSSGAGKTTLLNTL 640
           ++ IMG    GKTTLL+ L
Sbjct: 147 IVTIMGHVDHGKTTLLDAL 165


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 205 LIIRSNS*FHTHIHTARDYC*LRHNFFILIW 113
           L+I  N   HT+  T   +C +  NFF  I+
Sbjct: 177 LLIMGNE--HTYSETGPSHCVVCQNFFYQIY 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,386
Number of Sequences: 438
Number of extensions: 5199
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)