Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_J03
         (874 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300...   215   3e-56
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419          210   1e-54
04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061     31   1.6  
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57...    29   6.4  
03_06_0610 + 35052455-35053429,35054936-35055511                       29   6.4  

>11_04_0317 -
           16328558-16328612,16328698-16328901,16329794-16330065,
           16330152-16330220
          Length = 199

 Score =  215 bits (526), Expect = 3e-56
 Identities = 102/130 (78%), Positives = 115/130 (88%), Gaps = 1/130 (0%)
 Frame = +3

Query: 201 EIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 377
           E+KLF RWS  DVQV+D+SL DY++V   K+A YLPH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 10  EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTN 69

Query: 378 SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 557
           SLMMHGRNNGKK+MAVRIVKHA EIIHLLT  NP+QV+V AIINSGPRED+TRIG AG V
Sbjct: 70  SLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAV 129

Query: 558 RRQAVDVSPL 587
           RRQAVD+SPL
Sbjct: 130 RRQAVDISPL 139



 Score =  114 bits (275), Expect = 8e-26
 Identities = 55/62 (88%), Positives = 60/62 (96%)
 Frame = +1

Query: 583 PWRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKS 762
           P RRVNQAI+LL TGARE+AFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+
Sbjct: 138 PLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKA 197

Query: 763 NR 768
           NR
Sbjct: 198 NR 199


>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
          Length = 200

 Score =  210 bits (512), Expect = 1e-54
 Identities = 99/129 (76%), Positives = 113/129 (87%), Gaps = 1/129 (0%)
 Frame = +3

Query: 204 IKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNS 380
           +KLF  WS  DVQV+D+SL DY++V   K+A YLPH+AGRY+ KRFRKAQCP+VERLTNS
Sbjct: 12  VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNS 71

Query: 381 LMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVR 560
           LMMHGRNNGKK+MAVRIVKHA EIIHLLT  NP+QV+V AIINSGPRED+TRIG AG VR
Sbjct: 72  LMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVR 131

Query: 561 RQAVDVSPL 587
           RQAVD+SPL
Sbjct: 132 RQAVDISPL 140



 Score =  114 bits (275), Expect = 8e-26
 Identities = 55/62 (88%), Positives = 60/62 (96%)
 Frame = +1

Query: 583 PWRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKS 762
           P RRVNQAI+LL TGARE+AFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+
Sbjct: 139 PLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKA 198

Query: 763 NR 768
           NR
Sbjct: 199 NR 200


>04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061
          Length = 875

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 23/92 (25%), Positives = 39/92 (42%)
 Frame = +3

Query: 144 EAGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRY 323
           +AGS+ V   S   + D+ E+K  G       + S  S+ D  +V E      P S+ R 
Sbjct: 578 DAGSIEVPVSSDCVSGDVDEVKSNGDLKSIHDETSPTSILD--TVFEDSNSNEPESSRRT 635

Query: 324 AHKRFRKAQCPIVERLTNSLMMHGRNNGKKLM 419
           +       +CP ++ +  S      N+G  L+
Sbjct: 636 SCTERVALRCPAIDSVARSFSWEDTNSGSPLL 667


>07_01_0077 +
           566895-567127,567207-567331,571204-571340,571437-571542,
           571635-571885,572018-572128,572209-572320,572626-572716,
           573168-573507,573678-573900,573946-574204,574274-574481,
           574572-574622,574712-574870,574956-575120,575322-575399,
           575732-576031,576107-576259,576871-576918,577019-577188,
           577738-577852,578462-578623,578789-578893,578969-579199,
           579277-579410,579484-579738,579822-580110,580214-580306,
           580395-580520,580646-580897
          Length = 1693

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 136 T*PRQAAWLWKPCLYHKPPTF 198
           T P Q +WLW+  L H P  F
Sbjct: 88  TDPSQCSWLWREVLKHNPDAF 108


>03_06_0610 + 35052455-35053429,35054936-35055511
          Length = 516

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = -3

Query: 254 HIRDLHIVATPSAEKLDFR---NVGGLW*RHGFHN-HAACLGYVVIPVLLGHDWYFSITK 87
           ++   ++V TP A  L F      GGLW  +G  +  AAC+  V++ V+   DW+    +
Sbjct: 418 NLLSFYLVGTPVAVTLAFGARVGFGGLW--YGLLSAQAACVALVLLAVVWRTDWHLEALR 475

Query: 86  *K 81
            K
Sbjct: 476 AK 477


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,391,591
Number of Sequences: 37544
Number of extensions: 463570
Number of successful extensions: 1085
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)