Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_J01
(925 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 34 0.025
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 33 0.057
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.099
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.13
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.17
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.53
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 29 0.93
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 2.8
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 27 2.8
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.7
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 3.7
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 4.9
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 6.5
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 8.6
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.3 bits (75), Expect = 0.025
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = +2
Query: 656 PPPPXXXXKXXPPPXXXXXEPPPGTXXXPPVSPPXXPPXXSSLXXPXPXXP 808
PPPP P P PP PP PP PP + P P P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPP--PPPPPPGVAGAGPPPPPPP 781
Score = 31.9 bits (69), Expect = 0.13
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = +2
Query: 659 PPPXXXXKXXPPPXXXXXEPPPGTXXXPPVSPPXXPPXXSS 781
PPP PPP PPPG P PP PP S+
Sbjct: 752 PPPAPIMGGPPPPP-----PPPGVAGAGPPPPPPPPPAVSA 787
Score = 30.7 bits (66), Expect = 0.30
Identities = 17/50 (34%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Frame = +3
Query: 645 SPXPPPPXXXTXXKXXPPXXXXPNPPXXXXXXPXFPP----RXXPPXPPP 782
SP PPPP P P P P PP PP PPP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 33.1 bits (72), Expect = 0.057
Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Frame = +2
Query: 656 PPPPXXXXKXXPPPXXXXXE--PPPGTXXXPPVSPPXXPPXXSSLXXPXPXXPXTXNPXP 829
P PP + PP PPP PP+ P PP SSL P P P P
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPI-PSKAPPIPSSL--PPPAQPAAPVKSP 184
Query: 830 P 832
P
Sbjct: 185 P 185
Score = 27.5 bits (58), Expect = 2.8
Identities = 18/59 (30%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Frame = +2
Query: 659 PPPXXXXKXXPPPXXXXXEPPPGTXXXP--PVSPPXXPPXXSSLXXPXPXXPXTXNPXP 829
PPP PP P P + P P +P PP SL P P P P
Sbjct: 150 PPPSPASA---PPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.3 bits (70), Expect = 0.099
Identities = 28/121 (23%), Positives = 31/121 (25%)
Frame = +3
Query: 432 RGKXAXXXGPXXXXPPINPXPPXFRXRXXVSXPPXGXIRFPPKXGDXPGKNXXPNGQXXX 611
RGK G P P PP + PP G PP P P+
Sbjct: 322 RGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP-----PPPRSAPSTGRQP 376
Query: 612 RXRKKAXFXXFSPXPPPPXXXTXXKXXPPXXXXPNPPXXXXXXPXFPPRXXPPXPPPFXX 791
+ P PPP PP P P PP PP
Sbjct: 377 PPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAP 436
Query: 792 P 794
P
Sbjct: 437 P 437
Score = 31.1 bits (67), Expect = 0.23
Identities = 18/59 (30%), Positives = 21/59 (35%)
Frame = +2
Query: 656 PPPPXXXXKXXPPPXXXXXEPPPGTXXXPPVSPPXXPPXXSSLXXPXPXXPXTXNPXPP 832
PPPP PP +PP G PP PP S+ P P + PP
Sbjct: 311 PPPPP------PPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP 363
Score = 28.7 bits (61), Expect = 1.2
Identities = 29/122 (23%), Positives = 34/122 (27%)
Frame = +3
Query: 429 PRGKXAXXXGPXXXXPPINPXPPXFRXRXXVSXPPXGXIRFPPKXGDXPGKNXXPNGQXX 608
P+G+ A P P PP VS PP PP PG++
Sbjct: 355 PQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPA-----PPPA--IPGRSAPALPPLG 407
Query: 609 XRXRKKAXFXXFSPXPPPPXXXTXXKXXPPXXXXPNPPXXXXXXPXFPPRXXPPXPPPFX 788
R P P PP P P+ P P PP P P
Sbjct: 408 NASRTSTP-----PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAG 462
Query: 789 XP 794
P
Sbjct: 463 MP 464
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/61 (27%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Frame = +2
Query: 656 PPPPXXXXKXXPP-PXXXXXEPPPGTXXXPPVSP--PXXPPXXSSLXXPXPXXPXTXNPX 826
P PP P P P G PP+ P P PP + + P P P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
Query: 827 P 829
P
Sbjct: 478 P 478
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/46 (28%), Positives = 15/46 (32%)
Frame = +3
Query: 645 SPXPPPPXXXTXXKXXPPXXXXPNPPXXXXXXPXFPPRXXPPXPPP 782
+P PPP + P P P P PP PPP
Sbjct: 250 APAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPP 295
Score = 27.1 bits (57), Expect = 3.7
Identities = 16/56 (28%), Positives = 17/56 (30%)
Frame = +2
Query: 656 PPPPXXXXKXXPPPXXXXXEPPPGTXXXPPVSPPXXPPXXSSLXXPXPXXPXTXNP 823
PPP P P PPP P + PP SS P P P
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Score = 25.8 bits (54), Expect = 8.6
Identities = 16/58 (27%), Positives = 18/58 (31%)
Frame = +2
Query: 659 PPPXXXXKXXPPPXXXXXEPPPGTXXXPPVSPPXXPPXXSSLXXPXPXXPXTXNPXPP 832
PP + PP PP PP PP PP P P + PP
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSA---PPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.9 bits (69), Expect = 0.13
Identities = 18/57 (31%), Positives = 19/57 (33%)
Frame = +2
Query: 662 PPXXXXKXXPPPXXXXXEPPPGTXXXPPVSPPXXPPXXSSLXXPXPXXPXTXNPXPP 832
PP PP PPP PP S P P S P P P + P P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPS--APPPPLPASSAPSVP 1744
Score = 29.9 bits (64), Expect = 0.53
Identities = 16/48 (33%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Frame = +2
Query: 662 PPXXXXKXXPPPXXXXXEPP--PGTXXXPPVSPPXXPPXXSSLXXPXP 799
PP PPP PP P PP +PP P S+ P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 31.5 bits (68), Expect = 0.17
Identities = 27/76 (35%), Positives = 27/76 (35%)
Frame = -1
Query: 922 GGXXXXPGGXNATXXGXVXEXXXXXPFXGEGGXGVXGXXGXXXGXXKGGGXGGXXRGGNX 743
GG PGG G E G GG G G G G GGG GG GG
Sbjct: 198 GGPPPGPGGFGG-FGGFGGEGHHHGGHGGFGG-GPGGFEGGPGGF--GGGPGGF--GGGL 251
Query: 742 GXXXXXXGGFGXXXXG 695
G GGFG G
Sbjct: 252 GGFGGGPGGFGGGPGG 267
Score = 30.3 bits (65), Expect = 0.40
Identities = 23/67 (34%), Positives = 23/67 (34%)
Frame = -1
Query: 847 PFXGEGGXGVXGXXGXXXGXXKGGGXGGXXRGGNXGXXXXXXGGFGXXXXGGXXXFXVXX 668
P G GG G G G GG GG GG G GGFG G
Sbjct: 200 PPPGPGGFG--GFGGFGGEGHHHGGHGGF--GGGPGGFEGGPGGFGGGPGGFGGGLGGFG 255
Query: 667 XGGGGXG 647
G GG G
Sbjct: 256 GGPGGFG 262
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/45 (37%), Positives = 17/45 (37%)
Frame = -1
Query: 781 GGGXGGXXRGGNXGXXXXXXGGFGXXXXGGXXXFXVXXXGGGGXG 647
GGG GG GG G GGFG G GG G G
Sbjct: 187 GGGFGGF--GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.9 bits (64), Expect = 0.53
Identities = 17/58 (29%), Positives = 18/58 (31%)
Frame = +2
Query: 659 PPPXXXXKXXPPPXXXXXEPPPGTXXXPPVSPPXXPPXXSSLXXPXPXXPXTXNPXPP 832
P P PPP P P PPV PP P + P P PP
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKPSVGV-PPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238
Score = 27.1 bits (57), Expect = 3.7
Identities = 17/59 (28%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Frame = +2
Query: 659 PPPXXXXKXXPPPXXXXXEPPPGTXXXPPVSPPXXPP--XXSSLXXPXPXXPXTXNPXP 829
P P P P P PPV PP P S+ P P T P P
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/47 (31%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Frame = +3
Query: 645 SPXPPPPXXXTXXKXXPPXXXXPNPPXXXXXXPXFPP-RXXPPXPPP 782
S PP P PP P P P PP PP P P
Sbjct: 1176 SGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222
Score = 25.8 bits (54), Expect = 8.6
Identities = 13/46 (28%), Positives = 14/46 (30%)
Frame = +3
Query: 645 SPXPPPPXXXTXXKXXPPXXXXPNPPXXXXXXPXFPPRXXPPXPPP 782
+P P P P P P P PP PP P P
Sbjct: 1158 APPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKP 1203
Score = 25.8 bits (54), Expect = 8.6
Identities = 14/50 (28%), Positives = 15/50 (30%)
Frame = +3
Query: 645 SPXPPPPXXXTXXKXXPPXXXXPNPPXXXXXXPXFPPRXXPPXPPPFXXP 794
+P P P P P PP P PP PPP P
Sbjct: 1168 APPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAP 1217
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 29.1 bits (62), Expect = 0.93
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = -1
Query: 784 KGGGXGGXXRGGNXGXXXXXXGGFGXXXXGGXXXFXVXXXGGGGXG 647
+ G G RGG G GGFG GG GGG G
Sbjct: 131 RNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRG 176
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Frame = -1
Query: 838 GEGGX--GVXGXXGXXXGXXKGGGXGGXXRGGNXGXXXXXXGGFGXXXXGG 692
G GG G G G G +GG GG G G GGF GG
Sbjct: 139 GRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +3
Query: 693 PPXXXXPNPPXXXXXXPXFPPRXXPPXPPPF 785
P PNP F P PP PPPF
Sbjct: 158 PGFGNLPNPAMPPIPFLPFNPAAQPPFPPPF 188
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 27.5 bits (58), Expect = 2.8
Identities = 18/47 (38%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Frame = -1
Query: 781 GGGXGGXXRG-GNXGXXXXXXGGFGX-XXXGGXXXFXVXXXGGGGXG 647
GGG GG G G GGFG GG GGGG G
Sbjct: 136 GGGMGGGMGGMGGMDDDMDMDGGFGTRTRGGGMPGGFANMFGGGGAG 182
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +3
Query: 693 PPXXXXPNPPXXXXXXPXFPPRXXPPXPPP 782
PP P PP P F P PP PPP
Sbjct: 5 PPGNPPPPPPP-----PGFEPPSQPPPPPP 29
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 689 PPPXXXXXEPPPGTXXXPPVSPPXXPP 769
PP PPPG PP PP PP
Sbjct: 5 PPGNPPPPPPPPG--FEPPSQPPPPPP 29
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = -1
Query: 844 FXGEGGXGVXGXXGXXXGXXKGGGXGGXXRGGN 746
F G GG G G G G +GG G G+
Sbjct: 456 FGGRGGFGGRGGFGGGRGRGRGGARSGNPNRGS 488
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.6 bits (56), Expect = 4.9
Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Frame = +2
Query: 656 PPPPXXXXKXXPPPXXXXXEPPPGTXXXP-PVSP--PXXPPXXSSLXXPXPXXPXTXNPX 826
PPPP PP PP P P +P P P +S P P + NP
Sbjct: 926 PPPPKVGETYHPPTASGTRVPPVQQPSHPNPYTPVAPQSPVAAASRISSSPNMPPS-NPY 984
Query: 827 PP 832
P
Sbjct: 985 TP 986
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.2 bits (55), Expect = 6.5
Identities = 20/50 (40%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Frame = -1
Query: 838 GEGGX--GVXGXXGXXXGXXKGGGXGGXXRGGNXGXXXXXXGGFGXXXXG 695
G GG G G G G GGG GG RGG G GG G G
Sbjct: 10 GRGGSRGGRGGFNGGRGGF--GGGRGG-ARGGGRGGARGGRGGRGGARGG 56
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = -3
Query: 839 GXRGGXGFXXXGXXXXVXKGRRXRGGXXGGKXG 741
G GG G G GR RGG GG+ G
Sbjct: 27 GFGGGRGGARGGGRGGARGGRGGRGGARGGRGG 59
>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 313
Score = 25.8 bits (54), Expect = 8.6
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +2
Query: 722 PGTXXXPPVSPPXXPPXXSSLXXPXP 799
P T PP S P PP S P P
Sbjct: 120 PSTPELPPSSSPLLPPNGSESSSPIP 145
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,718,042
Number of Sequences: 5004
Number of extensions: 24599
Number of successful extensions: 181
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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