Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_I23
         (931 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AF067219-3|AAC17027.1|   74|Caenorhabditis elegans Hypothetical ...    29   3.6  
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AF125462-1|AAD12858.2|  244|Caenorhabditis elegans Hypothetical ...    28   8.3  

>Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical
           protein T01C3.7 protein.
          Length = 352

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -3

Query: 923 GXPXXGGFWERAXPFPKGEXGGXGXPXXXKGXEQ-GXGXXGXXQGGK 786
           G    GGF  R  P  +G  GG G P   +G  + G G  G  +GGK
Sbjct: 71  GGGDRGGFGGRGSP--RGGFGGRGSPRGGRGSPRGGRGGAGGMRGGK 115


>AF067219-3|AAC17027.1|   74|Caenorhabditis elegans Hypothetical
           protein R12E2.6 protein.
          Length = 74

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +1

Query: 790 PPXKXPXXPXPCSXPLXXX-GXPXPPFSPLGXGXALSQXPP 909
           PP +    P  C  P     G P PPF P+  G AL   PP
Sbjct: 28  PPPQCCGPPPACGNPCGGGFGPPPPPFGPV--GYALPPPPP 66


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
 Frame = +2

Query: 770 KXSPXVXPLXXXPRXPXPVPXPXPXPXXXXRXFP---LWGXGXPFPKXPP 910
           K  P   P+      P P P P P P    + FP   L+    P PK  P
Sbjct: 163 KSEPFPNPMPFPKPMPKPKPKPKPMPKHKPKPFPKPMLFPKPMPIPKPMP 212



 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/53 (28%), Positives = 18/53 (33%)
 Frame = +2

Query: 755 PXXXFKXSPXVXPLXXXPRXPXPVPXPXPXPXXXXRXFPLWGXGXPFPKXPPR 913
           P    K  P   P+      P P P P P P    +  P      P PK  P+
Sbjct: 114 PMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMLFPKPMPF---PKPMPKSKPK 163


>AF125462-1|AAD12858.2|  244|Caenorhabditis elegans Hypothetical
           protein Y66H1A.4 protein.
          Length = 244

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -2

Query: 912 RGGXLGKGXPXPQRGKXRXXXXGXGQGXGTG--XGXRGXFXRG 790
           RGG  G+G     RG  R    G G+G G G   G RG F  G
Sbjct: 155 RGGR-GRGGDRGGRGSDRGGRGGFGRGGGGGFRGGDRGGFGGG 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,686,525
Number of Sequences: 27780
Number of extensions: 184644
Number of successful extensions: 574
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)