Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_I20
         (922 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    52   1e-07
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    52   1e-07
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    32   0.13 
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    30   0.40 
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    26   6.5  

>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 52.0 bits (119), Expect = 1e-07
 Identities = 24/36 (66%), Positives = 27/36 (75%)
 Frame = +1

Query: 151 DEIRGMMDKXRNXRXMSVIAHVXHGKSTLTDSXVXK 258
           +E+R +M K  N R MSVIAHV HGKSTLTDS V K
Sbjct: 7   EEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQK 42


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 52.0 bits (119), Expect = 1e-07
 Identities = 24/36 (66%), Positives = 27/36 (75%)
 Frame = +1

Query: 151 DEIRGMMDKXRNXRXMSVIAHVXHGKSTLTDSXVXK 258
           +E+R +M K  N R MSVIAHV HGKSTLTDS V K
Sbjct: 7   EEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQK 42


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 151 DEIRGMMDKXRNXRXMSVIAHVXHGKSTLTDS 246
           +++  +     N R  +++AHV HGK+TL DS
Sbjct: 7   EKLVSLQKNQENIRNFTLLAHVDHGKTTLADS 38


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +1

Query: 190 RXMSVIAHVXHGKSTLTD 243
           R  +VIAH+ HGKSTL+D
Sbjct: 59  RNWAVIAHIDHGKSTLSD 76


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 580 AVLXRFVHTQQTXSQQPSRAPSVDXECSCYLRRXINV 470
           A L RF  ++QT  QQP+  P         LRR +++
Sbjct: 236 AELYRFRSSRQTYPQQPNSQPCEQHPAHANLRRSVSL 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,881,593
Number of Sequences: 5004
Number of extensions: 21169
Number of successful extensions: 29
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)