Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_I20
         (922 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical pr...    59   4e-09
M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation fact...    59   4e-09
L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical pr...    30   2.0  

>Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical
           protein F25H5.4 protein.
          Length = 852

 Score = 59.3 bits (137), Expect = 4e-09
 Identities = 27/37 (72%), Positives = 30/37 (81%)
 Frame = +1

Query: 148 IDEIRGMMDKXRNXRXMSVIAHVXHGKSTLTDSXVXK 258
           +DEIR +MD+ RN R MSVIAHV HGKSTLTDS V K
Sbjct: 6   VDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSK 42


>M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation factor
           protein.
          Length = 852

 Score = 59.3 bits (137), Expect = 4e-09
 Identities = 27/37 (72%), Positives = 30/37 (81%)
 Frame = +1

Query: 148 IDEIRGMMDKXRNXRXMSVIAHVXHGKSTLTDSXVXK 258
           +DEIR +MD+ RN R MSVIAHV HGKSTLTDS V K
Sbjct: 6   VDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSK 42


>L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical
           protein ZK1236.1 protein.
          Length = 645

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +1

Query: 172 DKXRNXRXMSVIAHVXHGKSTLTD 243
           DK RN     ++AHV HGKSTL D
Sbjct: 40  DKIRN---FGIVAHVDHGKSTLAD 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,856,568
Number of Sequences: 27780
Number of extensions: 136336
Number of successful extensions: 208
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)