Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_I20
         (922 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.97 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   3.9  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   3.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   5.2  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.0 bits (52), Expect = 0.97
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +1

Query: 196 MSVIAHVXHGKSTLTDS 246
           ++++ HV HGK+TL D+
Sbjct: 148 VTIMGHVDHGKTTLLDA 164


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 169 MDKXRNXRXMSVIAHVXHGKSTLTDSXVXK 258
           M K +    + VI HV  GKST T   + K
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYK 30


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 169 MDKXRNXRXMSVIAHVXHGKSTLTDSXVXK 258
           M K +    + VI HV  GKST T   + K
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYK 30


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 196 MSVIAHVXHGKSTL 237
           +  I HV HGKST+
Sbjct: 45  IGTIGHVAHGKSTI 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,994
Number of Sequences: 438
Number of extensions: 1673
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)