Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_I19
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...    89   8e-19
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...    89   8e-19
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    27   3.5  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    26   6.0  

>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score = 89.0 bits (211), Expect = 8e-19
 Identities = 41/58 (70%), Positives = 48/58 (82%)
 Frame = +2

Query: 137 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQ 310
           IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGIS KLQ
Sbjct: 17  IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQ 74



 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 24/44 (54%), Positives = 30/44 (68%)
 Frame = +3

Query: 333 DNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQ 464
           D YVPEVS LE D + VD DTKDMLK L ++ I  +++  PA Q
Sbjct: 82  DQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVLAPAPQ 124


>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 89.0 bits (211), Expect = 8e-19
 Identities = 41/58 (70%), Positives = 48/58 (82%)
 Frame = +2

Query: 137 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQ 310
           IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGIS KLQ
Sbjct: 17  IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQ 74



 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 22/33 (66%), Positives = 25/33 (75%)
 Frame = +3

Query: 333 DNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNI 431
           D YVPEVS LE D I VD DTKDMLK L +++I
Sbjct: 82  DQYVPEVSELEKDKINVDQDTKDMLKALGYDSI 114


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -2

Query: 225 RGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAFL 115
           RG+V + AIS+ ++ F+   S++++ +  +  FA FL
Sbjct: 352 RGIVLIAAISTTMIGFIVYGSIDIMNHIGVSYFACFL 388


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -3

Query: 443 LQAINIVEVQHLQHILGVGVYFDDVMFESRHFWDIVVTPLTLL 315
           L+  NI+E +++  +    +YF+  M  + +FW I   P  +L
Sbjct: 368 LEVKNIIEQRNVTTMENCNLYFNPEMPTTIYFWKIYSAPTWML 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,426,637
Number of Sequences: 5004
Number of extensions: 38241
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)