Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_I19
         (868 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...    94   1e-19
Z81139-7|CAI46624.1|  358|Caenorhabditis elegans Hypothetical pr...    29   5.7  

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score = 94.3 bits (224), Expect = 1e-19
 Identities = 42/58 (72%), Positives = 49/58 (84%)
 Frame = +2

Query: 137 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQ 310
           IEKYYTR+T DF  NKR+C+E+AII +KPLRNKIAG+ THLMRR+    VRGISIKLQ
Sbjct: 17  IEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGPVRGISIKLQ 74



 Score = 35.1 bits (77), Expect = 0.065
 Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
 Frame = +3

Query: 333 DNYVPEVSALEHD---IIEVDPDTKDMLKMLDFN 425
           DNY+PE+S ++      I+VD DT DMLK   FN
Sbjct: 82  DNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGFN 115


>Z81139-7|CAI46624.1|  358|Caenorhabditis elegans Hypothetical
           protein W05H5.5 protein.
          Length = 358

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +3

Query: 393 TKDMLKMLDFNNINGLQLTQPATQGWLWW 479
           T D+ KML+ NN+NGL+L      G+L W
Sbjct: 107 TDDIGKMLNVNNLNGLELI--LLSGFLQW 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,606,560
Number of Sequences: 27780
Number of extensions: 221769
Number of successful extensions: 516
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)