Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_I16
(867 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom... 30 0.37
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 29 1.1
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 28 1.5
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 28 2.0
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha... 27 3.5
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 27 4.6
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.0
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 26 6.0
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 26 6.0
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 26 8.0
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2... 26 8.0
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 26 8.0
>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 30.3 bits (65), Expect = 0.37
Identities = 18/69 (26%), Positives = 28/69 (40%)
Frame = +2
Query: 149 NMSVEASDSGKSDRKLYNSVITADYDDATKRCEQLQSEPDGSYIIKNTVTELLNNAESNT 328
+++V A DS S D+D K + + EP G + N L NA+ +T
Sbjct: 279 SVNVYAKDSNHSSASGNTKNKAKDWDSLAKLADLEEDEPTGEAALANLFQNLYKNADDDT 338
Query: 329 INFSYKLWT 355
K +T
Sbjct: 339 RRAMMKSYT 347
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +2
Query: 539 KFMSS-WESNRVYFKIFNPKYNQRLKMGDPVKDDERKVFSSDDATDSTSQWYLQAMNH 709
KF+ + +E + FKI++ RL++ D RK+ S D+ + +++W+LQ ++H
Sbjct: 425 KFIENDFEKMKRLFKIYD-----RLRIQLKGIDQSRKLDFSPDSEEKSTKWFLQQIDH 477
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +2
Query: 461 MTLSKDLDQNGDRDAYGDEDDHKNSWKFMSSWESNRVYFKIFNPKYNQRLK 613
M LS D D GD +A+G +H W+ +S++ S + + ++P ++LK
Sbjct: 258 MCLSGDFDHYGDVEAFG---NHPPWWRQLSNFASVQDRLRDWDPIVAKKLK 305
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 392 LEFRLILDDKKDCKIINKHDDLYMTLSKDLDQNGD 496
LE+ L+L + K+IN HD ++ TL L D
Sbjct: 457 LEWVLLLQRRTGGKLINMHDPIFQTLLLQLSDPSD 491
>SPAC19D5.02c |||peroxisomal membrane protein Pex22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 27.1 bits (57), Expect = 3.5
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -3
Query: 718 VAFVIHRLQVPLTCAV 671
+AFV H L++P++CAV
Sbjct: 11 LAFVAHALEIPISCAV 26
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 26.6 bits (56), Expect = 4.6
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 437 INKHDDLYMTLSKDLDQNGDRDAYGDEDDHKNSWKFMSSWESNRVYFKIFNPKYNQ 604
I++ DD Y + L++ D DAY + ++ +F+S ESN F YN+
Sbjct: 54 IHEQDDSYSDI---LEEEPDEDAYDSPERPSSTEEFISQDESNISAGSSFMFPYNR 106
>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 657
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 611 KMGDPVKDDERKVFSSDDATDSTSQWYLQAMNHKGDLL 724
++GD VK+ + + + + DSTS+W L N G +
Sbjct: 562 EIGDYVKELDEESKKAIENKDSTSEWLLHLYNFFGSAI 599
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 26.2 bits (55), Expect = 6.0
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +2
Query: 236 KRCEQLQSEPDGSYIIKNTVTELLNNAESNTINFSYKLWTTGHQNIVQSCFPLEFRLILD 415
K E+L + + ++ N+V LN+ NF Y +W+ N QS L + L D
Sbjct: 803 KMNEELSTTDEAVKLLANSV---LNDVHPRVPNFRYFIWSVPMNNWFQSLVWL-YTLSFD 858
Query: 416 DK 421
+K
Sbjct: 859 EK 860
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 395 EFRLILDDKKDCKIINKHDDLYMTLSKDLDQNGDRDAYGDEDDHKNS 535
E + D++ D + + D+ + S D+ ++GD DEDD K+S
Sbjct: 345 EAEWVADEEDDGEDLESEDE-EVDNSDDIVEDGDNAFVDDEDDDKDS 390
>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 742
Score = 25.8 bits (54), Expect = 8.0
Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Frame = +2
Query: 101 KLKILTTLSVIIATFFNMSVEA----SDSGKSDRKLYNSVITADYDDATKRCEQLQSEPD 268
++ ++TT S++ T +A SDS + + +++ YD+ + + D
Sbjct: 323 EVNMITTTSLVDNTMEKTDADAASLSSDSDGEEGHIVHALEEMAYDEENPYVDVVPKAMD 382
Query: 269 GSYIIKNTVTELLNNAESNTINFSYKLWTTGHQNIVQSCF 388
S V +N A+ +T+N +Y + +T N V F
Sbjct: 383 ESENPDFGVDTEVNMADGSTMNENYSIISTAAANGVYEYF 422
>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 476 DLDQNGDRDAYGDEDDHKNSWKFMSSWESN 565
D+ + D DAYG+E+ W S +SN
Sbjct: 254 DISEILDLDAYGNENTSNLEWSIQRSNDSN 283
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 632 DDERKVFSSDDATDSTSQW 688
+DE V+SSD +T+S+SQ+
Sbjct: 328 EDEESVYSSDVSTESSSQF 346
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,426,842
Number of Sequences: 5004
Number of extensions: 71550
Number of successful extensions: 226
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -