Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_I13
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    99   9e-22
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    77   3e-15
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    32   0.12 
SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces po...    28   1.5  
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    27   4.6  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    26   8.0  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    26   8.0  

>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 98.7 bits (235), Expect = 9e-22
 Identities = 53/133 (39%), Positives = 77/133 (57%), Gaps = 7/133 (5%)
 Frame = +3

Query: 417 WCYIRASIDYEVSKVEIK----FYEM--FPFRVTSRLWGKMAACEIPVSLRSFVYGTYIR 578
           W   R    Y+   V+++    FY +   P R  SR WG +   EIP+ +R   +G Y +
Sbjct: 52  WAQDRHEKTYQKKGVQVEGPWQFYVLTTLPLRTLSRWWGYVNRIEIPLWMRVPAFGLYSK 111

Query: 579 MFSVNLNDAAVTDLKYYKSLSAFFTRPLRDGARYISA-APCVSPCDGVVLNCGPADTDKI 755
           +F  NL +A   D++ YK+L+ FFTR L+ GAR I   AP V P DG +LN G  +  ++
Sbjct: 112 IFGCNLTEADPDDVRQYKNLAEFFTRKLKPGARVIDPDAPIVIPADGKILNYGVIEGGQL 171

Query: 756 EQVKGVTYSLEGI 794
           EQVKG+TYSL+ +
Sbjct: 172 EQVKGITYSLDAL 184


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 77.0 bits (181), Expect = 3e-15
 Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
 Frame = +3

Query: 462 EIKFYEMFPFRVTSRLWGKMAACEIPVSLRSFVYGTYIRMFSVNLNDAAVTDLKYYKSLS 641
           ++      P R  SR+WG+     +P  LR+  +  Y  +F  NL++    DL +Y++  
Sbjct: 75  QVYLLSSLPLRSLSRVWGQFNRAHLPTFLRTPGFKLYAWVFGCNLSELKDPDLTHYRNFQ 134

Query: 642 AFFTRPLRDGARYIS-AAPCVSPCDGVVLNCGPADTDKIEQVKGVTYSLEGI 794
            FF R LR   R +   +P VSP DG ++  G  D ++I+ VKG++YSLE +
Sbjct: 135 DFFCRELRPETRPVDPVSPVVSPVDGRIVCQGVVDNNRIQHVKGLSYSLEAL 186


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 495 VTSRLWGKMAACEIPVSLRSFVYGTYIRMFSVNLNDA 605
           V+ RL G M+    P++L +F YG Y+R  S    DA
Sbjct: 300 VSMRLTGYMSLIVPPIALGAFFYGEYVRKLSRTTQDA 336


>SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 171

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -2

Query: 866 SLFFSKGVXIALIFPF*PXXFQPRNSFKAVCHTFYLFNLIGISWATVQDYSVTGRYAG 693
           S + S  V    IF F     Q RN+F  +C  F+L     + ++T+Q Y+++ R  G
Sbjct: 16  SFYSSTVVKNVSIFDF-EKVNQHRNTFAFICDVFWLKLSFTLRYSTLQVYNLSKRPTG 72


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 248 MNQMYKPRLRPHRPFXTNEHNSNK 319
           +N+M +P L P  PF T E +S K
Sbjct: 59  VNEMVQPALGPANPFVTKEQDSIK 82


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = +3

Query: 282  TGPSXQTSTIQTKSFNTNANNKTKWLNFRAIFTRWMPLGSVMYVGWCYIRASI 440
            TGP    +    + F     N  +    RAI  R  P+   + VGW  I  +I
Sbjct: 1295 TGPEVTVTGNMIEDFCRTVGNHNEAYTKRAIRKRMAPMDFAIVVGWQAITKAI 1347


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 735 PADTDKIEQVKGVTYSLEGIPRLKXXWLKRKDES 836
           P +  +IEQ K +  +L    R    WLKR+++S
Sbjct: 341 PREVKQIEQPKELVLNLLPFQREGVYWLKRQEDS 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,324,808
Number of Sequences: 5004
Number of extensions: 68267
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)