Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_I13
         (867 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0014 + 113638-113754,113836-113950,114570-114835,115365-11...    51   1e-06
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047...    31   0.90 
04_03_0379 + 15141127-15141231,15141566-15141769,15141856-151420...    30   2.8  
03_01_0302 - 2361948-2362649,2363422-2363617,2363873-2363997,236...    29   3.6  
02_05_0255 - 27184306-27184914,27185009-27185272                       29   6.4  

>03_01_0014 +
           113638-113754,113836-113950,114570-114835,115365-115575,
           115915-115979,118723-118930,119457-119566,119663-119913,
           120250-120356,120442-120509,120624-120701,121070-121198,
           121341-121481,122297-122344,122648-122743,124071-124183,
           124441-124591,124745-124818,124913-125072,125356-125454,
           125532-125618,125761-125907
          Length = 946

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
 Frame = +3

Query: 591 NLNDAAVTDLKYYKSLSAFFTRPLRDGARYISAAP-C-VSPCDGVVLNCGP--ADTDKIE 758
           +L +AA+  L+ Y SL AFF R L++G+R I A P C VSP DG VL  G        IE
Sbjct: 328 DLQEAAMP-LEEYPSLQAFFIRSLKEGSRPIDADPNCLVSPVDGKVLRLGELRGPGTMIE 386

Query: 759 QVKGVTYSLEGIPRLKXXWLKRKDESYXNSFTKE 860
           QVKG +YS   +          ++E +    T++
Sbjct: 387 QVKGFSYSAASLLGASSSLHGAEEEDFSREHTEQ 420


>12_02_0228 +
           15903452-15903812,15904153-15904202,15904615-15904713,
           15907146-15907415,15908045-15908125,15909033-15909599,
           15909677-15910053,15910326-15911613
          Length = 1030

 Score = 31.5 bits (68), Expect = 0.90
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -3

Query: 778 YVTPFTCSILSVSAGPQFKTTPSQGDTQGAADMYLAPS 665
           Y TP   +I  +S+ P FK+  S  D  G    Y APS
Sbjct: 242 YTTPNRSAIYKMSSSPYFKSAVSSRDLFGTVSPYQAPS 279


>04_03_0379 +
           15141127-15141231,15141566-15141769,15141856-15142037,
           15142898-15143036,15143111-15143299,15143943-15144050,
           15144143-15144222,15144549-15144600,15144731-15144799,
           15144876-15144910,15145351-15145510,15147414-15147470,
           15147566-15147622,15147971-15148027,15148126-15148182,
           15148551-15148670,15148760-15148996,15149550-15149591
          Length = 649

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
 Frame = +1

Query: 46  GSSLQKLSTVNVKVIQLYYK--VSLVRTKTARETSNKLNKHARY**TSDVIAALWSHVSA 219
           GS L ++    V+ +QL  K     ++ + ARE    LNKHAR      V  +  +H   
Sbjct: 436 GSLLVRIQPRIVEALQLNQKRPAMKIQPRIARELQLSLNKHARKVQPRIVEESQLNHNRH 495

Query: 220 DALKELPPSHESNVQTAVTSTQALQXKRAQF 312
           D + +   + ES V   +  T+ +Q   A++
Sbjct: 496 DGMVQPGVARESQVNQNMHVTKGVQKHIARY 526


>03_01_0302 -
           2361948-2362649,2363422-2363617,2363873-2363997,
           2364118-2364180,2364445-2364495,2364597-2364668,
           2364779-2364886,2365031-2365135,2365505-2365555,
           2365971-2365995,2366234-2366258,2366352-2366439
          Length = 536

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 372 LRGNLTISFYYWRSY*NSLFELCSFVLKGLCGRNR 268
           +RG+ T ++Y+   Y   LF  C F ++ +C  N+
Sbjct: 191 VRGDGTRAYYFSNEYLMDLFSTCGFTVEEICVHNK 225


>02_05_0255 - 27184306-27184914,27185009-27185272
          Length = 290

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -2

Query: 563 VDEAAEGHRDFAGRHF-PPQSTGHP 492
           + E   GH+D AG H  PP +TG P
Sbjct: 116 IKEKLPGHKDHAGEHAPPPAATGFP 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,735,624
Number of Sequences: 37544
Number of extensions: 461990
Number of successful extensions: 1104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)