Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_I13
(867 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00031-2|AAT92090.1| 377|Caenorhabditis elegans Hypothetical pr... 103 2e-22
U00031-3|AAK18866.2| 348|Caenorhabditis elegans Hypothetical pr... 101 9e-22
U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protei... 30 1.9
Z95559-17|CAL44975.1| 331|Caenorhabditis elegans Hypothetical p... 30 2.5
U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily as... 29 3.3
U88169-8|AAB42237.1| 866|Caenorhabditis elegans Holocentric chr... 29 5.7
AL110487-13|CAB54429.2| 268|Caenorhabditis elegans Hypothetical... 29 5.7
AF456253-1|AAL59611.1| 268|Caenorhabditis elegans secreted 2-im... 29 5.7
AF321299-1|AAK07638.1| 866|Caenorhabditis elegans CENP-C-like p... 29 5.7
>U00031-2|AAT92090.1| 377|Caenorhabditis elegans Hypothetical
protein B0361.5b protein.
Length = 377
Score = 103 bits (247), Expect = 2e-22
Identities = 66/180 (36%), Positives = 96/180 (53%), Gaps = 7/180 (3%)
Frame = +3
Query: 315 TKSFNTNANNKTK--WLNFRAIFTRWMPLGSVMYVGWCYI---RASID--YEVSKVEIKF 473
TK A+ K K W+ + ++ T + +G YVG+ + R +D + S +I+
Sbjct: 44 TKEVIIGASQKKKRSWVKWLSVST--LIIGGASYVGYLFTPDWREIVDSKHYYSNWKIRV 101
Query: 474 YEMFPFRVTSRLWGKMAACEIPVSLRSFVYGTYIRMFSVNLNDAAVTDLKYYKSLSAFFT 653
Y PF SR+ G +A EIPV LR + G + RM+ ++D D K Y S +AFF
Sbjct: 102 YLSLPFNTASRVIGGLANQEIPVWLREHLLGGFARMYDCRMDDCVDPDFKNYPSFAAFFN 161
Query: 654 RPLRDGARYISAAPCVSPCDGVVLNCGPADTDKIEQVKGVTYSLEGIPRLKXXWLKRKDE 833
R L++ R ISA+P VSP DG VL+ G + +KIE VKG Y ++ L L +KDE
Sbjct: 162 RKLKESTRPISASPLVSPADGTVLHFGKVEDNKIEYVKGHDYDVDKF--LGDVDLPQKDE 219
>U00031-3|AAK18866.2| 348|Caenorhabditis elegans Hypothetical
protein B0361.5a protein.
Length = 348
Score = 101 bits (241), Expect = 9e-22
Identities = 61/165 (36%), Positives = 90/165 (54%), Gaps = 5/165 (3%)
Frame = +3
Query: 354 WLNFRAIFTRWMPLGSVMYVGWCYI---RASID--YEVSKVEIKFYEMFPFRVTSRLWGK 518
W+ + ++ T + +G YVG+ + R +D + S +I+ Y PF SR+ G
Sbjct: 30 WVKWLSVST--LIIGGASYVGYLFTPDWREIVDSKHYYSNWKIRVYLSLPFNTASRVIGG 87
Query: 519 MAACEIPVSLRSFVYGTYIRMFSVNLNDAAVTDLKYYKSLSAFFTRPLRDGARYISAAPC 698
+A EIPV LR + G + RM+ ++D D K Y S +AFF R L++ R ISA+P
Sbjct: 88 LANQEIPVWLREHLLGGFARMYDCRMDDCVDPDFKNYPSFAAFFNRKLKESTRPISASPL 147
Query: 699 VSPCDGVVLNCGPADTDKIEQVKGVTYSLEGIPRLKXXWLKRKDE 833
VSP DG VL+ G + +KIE VKG Y ++ L L +KDE
Sbjct: 148 VSPADGTVLHFGKVEDNKIEYVKGHDYDVDKF--LGDVDLPQKDE 190
>U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protein
20 protein.
Length = 288
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 476 RNVPLPGD-QSIVGENGGLRNPGVPPQLR 559
R P PG Q GE+GG NPG P Q+R
Sbjct: 179 RGPPGPGGPQGEAGEDGGAGNPGTPGQVR 207
>Z95559-17|CAL44975.1| 331|Caenorhabditis elegans Hypothetical
protein Y41E3.19 protein.
Length = 331
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -3
Query: 790 PSRLYVTPFTCSILSVSAGPQFKTTPSQG-DTQGAADMYLAPSLSGLVKNAD 638
P++++ FT + S GP + PS +T G D YL + GLVKN+D
Sbjct: 108 PAKIHQEEFT-PVTSKCDGPCQREFPSNLLNTIGRCDHYLCTACYGLVKNSD 158
>U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily
assigned gene nameprotein 224 protein.
Length = 465
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 27 GNSLRFWIKPTKTVNCQCQSHSVIL*SEF 113
G L FW K K C+ H V+L +EF
Sbjct: 52 GLDLHFWRKMCKNCGCRMDEHDVVLPNEF 80
>U88169-8|AAB42237.1| 866|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 4 protein.
Length = 866
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +1
Query: 49 SSLQKLSTVNVKVIQ----LYYKVSLVRTKTARETSNKLNKHA 165
S ++L+ V VI+ YY+ + VRT T RE +K NK A
Sbjct: 796 SGCKRLTGVTAVVIKDPRLCYYRTADVRTATERELKDKANKRA 838
>AL110487-13|CAB54429.2| 268|Caenorhabditis elegans Hypothetical
protein Y39E4B.8 protein.
Length = 268
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 711 DGVVLNCGPADTDKIEQVKGVTYSLEG 791
D VVLNC TDK E+V V ++ +G
Sbjct: 159 DEVVLNCTVTSTDKDEEVLDVVWTRDG 185
>AF456253-1|AAL59611.1| 268|Caenorhabditis elegans secreted
2-immunoglobulin-domainprotein ZIG-8 protein.
Length = 268
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 711 DGVVLNCGPADTDKIEQVKGVTYSLEG 791
D VVLNC TDK E+V V ++ +G
Sbjct: 159 DEVVLNCTVTSTDKDEEVLDVVWTRDG 185
>AF321299-1|AAK07638.1| 866|Caenorhabditis elegans CENP-C-like
protein HCP-4 protein.
Length = 866
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +1
Query: 49 SSLQKLSTVNVKVIQ----LYYKVSLVRTKTARETSNKLNKHA 165
S ++L+ V VI+ YY+ + VRT T RE +K NK A
Sbjct: 796 SGCKRLTGVTAVVIKDPRLCYYRTADVRTATERELKDKANKRA 838
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,544,963
Number of Sequences: 27780
Number of extensions: 400668
Number of successful extensions: 1071
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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