Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_I12
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   177   2e-45
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    27   3.7  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  177 bits (430), Expect = 2e-45
 Identities = 78/105 (74%), Positives = 98/105 (93%)
 Frame = +2

Query: 224 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 403
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE++I+D+FL P LNDEV+K++PVQ
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQ 86

Query: 404 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILG 538
           KQTRAGQRTRFKAFV IGD++GH+GLG+KC+KEVATAIRGAII+G
Sbjct: 87  KQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMG 131



 Score =  103 bits (247), Expect = 4e-23
 Identities = 48/99 (48%), Positives = 62/99 (62%)
 Frame = +1

Query: 574 GVTRSESHTPSLGKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGS 753
           G    + HT  + KV+GKCGSVTVRL+PAPRG G+V+APV K+ LQ+AG++DCYT +RGS
Sbjct: 144 GTALGDPHTVPV-KVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGS 202

Query: 754 TGTLGXFAXXXXXXXXXXXXXXXPDLWRDIPLTXSPYSE 870
           T TLG F                P+LW + P   +P  E
Sbjct: 203 TKTLGNFVKAAFAAASLTYGILTPNLWAERPFGQTPIEE 241



 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 17/38 (44%), Positives = 25/38 (65%)
 Frame = +3

Query: 495 ARKSPLPFEALLSLAKLSVLPVRRGYWGNKIGKPHTVP 608
           A++        + + KLS++P+RRGYWG  +G PHTVP
Sbjct: 117 AKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHTVP 154


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 698 RSFFRWLVYRTATPQLVXQL 757
           RS F+WL+  TATP+L+  L
Sbjct: 69  RSVFQWLIALTATPRLLVLL 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,362,281
Number of Sequences: 5004
Number of extensions: 67026
Number of successful extensions: 180
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)