Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_I12
(914 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 165 6e-41
07_01_0756 + 5819367-5820038,5820847-5821005 160 2e-39
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 65 6e-11
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 2e-05
02_04_0503 + 23526699-23527112 31 1.3
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 5.2
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 165 bits (400), Expect = 6e-41
Identities = 74/104 (71%), Positives = 92/104 (88%)
Frame = +2
Query: 224 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 403
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+KE +I++ + P L DEV+KI PVQ
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQ 96
Query: 404 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 535
KQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIIL
Sbjct: 97 KQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIIL 140
Score = 105 bits (252), Expect = 5e-23
Identities = 48/86 (55%), Positives = 58/86 (67%)
Frame = +1
Query: 613 KVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGXFAXXXXX 792
KVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG++D +TS+RGST TLG F
Sbjct: 166 KVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFD 225
Query: 793 XXXXXXXXXXPDLWRDIPLTXSPYSE 870
PD WRD SP+ E
Sbjct: 226 CLMKTYGFLTPDFWRDTKFVKSPFQE 251
Score = 56.8 bits (131), Expect = 2e-08
Identities = 24/38 (63%), Positives = 29/38 (76%)
Frame = +3
Query: 495 ARKSPLPFEALLSLAKLSVLPVRRGYWGNKIGKPHTVP 608
A++ + LAKLSV+PVRRGYWGNKIG+PHTVP
Sbjct: 127 AKEVATAIRGAIILAKLSVVPVRRGYWGNKIGQPHTVP 164
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 160 bits (388), Expect = 2e-39
Identities = 73/104 (70%), Positives = 91/104 (87%)
Frame = +2
Query: 224 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 403
++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++ + P L DEV+KI PVQ
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQ 99
Query: 404 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 535
KQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIIL
Sbjct: 100 KQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIIL 143
Score = 101 bits (243), Expect = 6e-22
Identities = 46/86 (53%), Positives = 58/86 (67%)
Frame = +1
Query: 613 KVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGXFAXXXXX 792
KVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG++D +TS+RGST TLG F
Sbjct: 169 KVTGKCGSVTVRMVPAPRGSGIVAAHVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFD 228
Query: 793 XXXXXXXXXXPDLWRDIPLTXSPYSE 870
PD WR+ +P+ E
Sbjct: 229 CLMKTYGFLTPDFWRETRFIKTPFQE 254
Score = 58.4 bits (135), Expect = 7e-09
Identities = 25/38 (65%), Positives = 29/38 (76%)
Frame = +3
Query: 495 ARKSPLPFEALLSLAKLSVLPVRRGYWGNKIGKPHTVP 608
A++ + LAKLSV+PVRRGYWGNKIGKPHTVP
Sbjct: 130 AKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVP 167
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 65.3 bits (152), Expect = 6e-11
Identities = 32/60 (53%), Positives = 43/60 (71%)
Frame = +1
Query: 595 HTPSLGKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGXF 774
HT S KV K GSVTVR++ P G+ +V+ VPKK+L+ AG++D +TS+RGST TL F
Sbjct: 49 HTVSC-KVADKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGIEDVFTSSRGSTKTLSNF 107
Score = 40.7 bits (91), Expect = 0.002
Identities = 21/42 (50%), Positives = 26/42 (61%)
Frame = +2
Query: 443 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILG*VVCFTSSKR 568
FV +GD + HI LGVKC+K AT + GAIIL C + R
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILAMFRCAEGATR 41
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = +2
Query: 371 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILG 538
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + G
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNG 226
>02_04_0503 + 23526699-23527112
Length = 137
Score = 31.1 bits (67), Expect = 1.3
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -1
Query: 221 RAHDHGRDHDRVHEDRRGLYLHRVIRIRRENRHCPPAGAASSH 93
RAH G DHD E+ G L + RHC AA+S+
Sbjct: 46 RAHQDGVDHDEAEEEEEGPKLEH----DKHERHCMAGSAATSN 84
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 505 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 389
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,239,810
Number of Sequences: 37544
Number of extensions: 501559
Number of successful extensions: 1380
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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