Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_I12
(914 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 158 6e-39
Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical pr... 30 2.0
AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical... 30 2.0
Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical pr... 30 2.7
Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical pr... 30 2.7
AL032635-6|CAE18002.1| 193|Caenorhabditis elegans Hypothetical ... 29 4.6
AL032635-5|CAB63375.1| 260|Caenorhabditis elegans Hypothetical ... 29 4.6
AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear recep... 28 8.1
AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormo... 28 8.1
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 158 bits (383), Expect = 6e-39
Identities = 80/102 (78%), Positives = 86/102 (84%)
Frame = +2
Query: 227 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQK 406
E + EW PVTKLGRLV+E KI LE IYL SLPIKEFEIID L +L DEVLKI PVQK
Sbjct: 52 EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISPVQK 110
Query: 407 QTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAII 532
QT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVATAIRGAI+
Sbjct: 111 QTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIV 152
Score = 115 bits (276), Expect = 5e-26
Identities = 54/84 (64%), Positives = 60/84 (71%)
Frame = +1
Query: 613 KVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGXFAXXXXX 792
KVTGKC SV VRLIPAPRGTGIVSAPVPKKLL MAG++DCYT+A+GST TLG FA
Sbjct: 179 KVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLGNFAKATYA 238
Query: 793 XXXXXXXXXXPDLWRDIPLTXSPY 864
PDLW++ L SPY
Sbjct: 239 ALQRTYSYLTPDLWKEEALEKSPY 262
Score = 52.4 bits (120), Expect = 4e-07
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +3
Query: 537 AKLSVLPVRRGYWGNKIGKPHTVP 608
AKL+V+PVRRGYWGNKIG PHTVP
Sbjct: 154 AKLAVVPVRRGYWGNKIGLPHTVP 177
>Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 30.3 bits (65), Expect = 2.0
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -3
Query: 432 RVRCPARVCFCTGMIFRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 256
R R P + T R+SS R P S +S + + + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581
Query: 255 VTGT 244
+ T
Sbjct: 582 QSNT 585
>AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 30.3 bits (65), Expect = 2.0
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -3
Query: 432 RVRCPARVCFCTGMIFRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 256
R R P + T R+SS R P S +S + + + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581
Query: 255 VTGT 244
+ T
Sbjct: 582 QSNT 585
>Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 625 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 756
+C + V PRG G+ P K+ + G++D Y GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258
>Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 625 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 756
+C + V PRG G+ P K+ + G++D Y GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258
>AL032635-6|CAE18002.1| 193|Caenorhabditis elegans Hypothetical
protein Y51A2A.11 protein.
Length = 193
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 639 YRTTLAGDLAKGRCVAFRSCYPSNLFE 559
+ T G L K RCV +C P+N FE
Sbjct: 95 HAVTWIGGLRKARCVNVAACAPANTFE 121
>AL032635-5|CAB63375.1| 260|Caenorhabditis elegans Hypothetical
protein Y51A2A.7 protein.
Length = 260
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 639 YRTTLAGDLAKGRCVAFRSCYPSNLFE 559
+ T G L K RCV +C P+N FE
Sbjct: 162 HAVTWIGGLRKARCVNVAACAPANTFE 188
>AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear receptor
NHR-121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 382 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 525
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 382 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 525
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,103,030
Number of Sequences: 27780
Number of extensions: 396747
Number of successful extensions: 1113
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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