Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_I09
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.13c |||riboflavin synthase |Schizosaccharomyces pombe|c...    27   4.6  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    27   4.6  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    26   8.0  
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc...    26   8.0  

>SPCC1450.13c |||riboflavin synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 208

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 410 SYKINNNCMTQTDNKGYKFTIG 475
           S  +N  C+T TD   Y FT+G
Sbjct: 41  SIAVNGTCLTVTDFDRYHFTVG 62


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1158

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 440  QTDNKGYKFTIGHITDIFGKSCVCNMNSLLCLTSR*VLNLTIR 568
            Q ++K  +   GH++  F K+  C    L+C     VLN T+R
Sbjct: 905  QINSKSLRRVTGHVS--FVKTGFCMQRILVCAVKSTVLNTTLR 945


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 334 ATLQNQN-NKIHKFGRQYLTNSSNLSP 257
           A + N+N N  HKFG ++ T  ++LSP
Sbjct: 575 AVISNENLNPSHKFGIKHSTFKTSLSP 601


>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 801 NTTKH*IIYSCKRHYSIKLKXXTYLAPXSVPPD 703
           N  K   I   K+H+  K+K  + LAP   PP+
Sbjct: 46  NDIKRKYIELVKKHHPDKMKNASQLAPTESPPE 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,370,315
Number of Sequences: 5004
Number of extensions: 69623
Number of successful extensions: 155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)