Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_I09
         (871 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY003844-1|AAK11811.1|  107|Homo sapiens immunoglobulin heavy ch...    32   3.1  
BC112246-1|AAI12247.1|  520|Homo sapiens poly(A)-specific ribonu...    30   9.5  
AL139045-2|CAI19750.2|  520|Homo sapiens poly(A)-specific ribonu...    30   9.5  
AL139045-1|CAM27947.1|  531|Homo sapiens poly(A)-specific ribonu...    30   9.5  
AK097559-1|BAC05101.1|  520|Homo sapiens protein ( Homo sapiens ...    30   9.5  
AK093139-1|BAC04070.1|  531|Homo sapiens protein ( Homo sapiens ...    30   9.5  

>AY003844-1|AAK11811.1|  107|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 107

 Score = 31.9 bits (69), Expect = 3.1
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -3

Query: 524 ENSCYIHM-TFQKYRLYVQL*TYNLYCQSGSYSYYLFY--MNIYQPGLT 387
           +NS Y+ M + +     V     NLYC  GS SYY +Y  M+++  G T
Sbjct: 46  KNSLYLQMNSLRAEDTAVYYCAKNLYCSGGSCSYYYYYYGMDVWGKGTT 94


>BC112246-1|AAI12247.1|  520|Homo sapiens poly(A)-specific
           ribonuclease (PARN)-like domain containing 1 protein.
          Length = 520

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -2

Query: 498 FPK-ISVICPIVNL*PLLSVWVIQLLFILYEYLSTWTHKPGALILNYERWSTVSDMQHY 325
           FP+ + V+ P VN   L+   V ++ F   +Y S    +P  LIL+ +RW  VS+ Q Y
Sbjct: 384 FPQYLDVLAPYVNQVNLIRAGVPKINFSGPDYPSI---RPPILILSVKRWPGVSEQQVY 439


>AL139045-2|CAI19750.2|  520|Homo sapiens poly(A)-specific
           ribonuclease (PARN)-like domain containing 1 protein.
          Length = 520

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -2

Query: 498 FPK-ISVICPIVNL*PLLSVWVIQLLFILYEYLSTWTHKPGALILNYERWSTVSDMQHY 325
           FP+ + V+ P VN   L+   V ++ F   +Y S    +P  LIL+ +RW  VS+ Q Y
Sbjct: 384 FPQYLDVLAPYVNQVNLIRAGVPKINFSGPDYPSI---RPPILILSVKRWPGVSEQQVY 439


>AL139045-1|CAM27947.1|  531|Homo sapiens poly(A)-specific
           ribonuclease (PARN)-like domain containing 1 protein.
          Length = 531

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -2

Query: 498 FPK-ISVICPIVNL*PLLSVWVIQLLFILYEYLSTWTHKPGALILNYERWSTVSDMQHY 325
           FP+ + V+ P VN   L+   V ++ F   +Y S    +P  LIL+ +RW  VS+ Q Y
Sbjct: 395 FPQYLDVLAPYVNQVNLIRAGVPKINFSGPDYPSI---RPPILILSVKRWPGVSEQQVY 450


>AK097559-1|BAC05101.1|  520|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40240 fis, clone TESTI2023752. ).
          Length = 520

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -2

Query: 498 FPK-ISVICPIVNL*PLLSVWVIQLLFILYEYLSTWTHKPGALILNYERWSTVSDMQHY 325
           FP+ + V+ P VN   L+   V ++ F   +Y S    +P  LIL+ +RW  VS+ Q Y
Sbjct: 384 FPQYLDVLAPYVNQVNLIRAGVPKINFSGPDYPSI---RPPILILSVKRWPGVSEQQVY 439


>AK093139-1|BAC04070.1|  531|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35820 fis, clone TESTI2006212, weakly similar to
           Poly(A)-specific ribonuclease (deadenylation nuclease).
           ).
          Length = 531

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -2

Query: 498 FPK-ISVICPIVNL*PLLSVWVIQLLFILYEYLSTWTHKPGALILNYERWSTVSDMQHY 325
           FP+ + V+ P VN   L+   V ++ F   +Y S    +P  LIL+ +RW  VS+ Q Y
Sbjct: 395 FPQYLDVLAPYVNQVNLIRAGVPKINFSGPDYPSI---RPPILILSVKRWPGVSEQQVY 450


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,808,749
Number of Sequences: 237096
Number of extensions: 2322516
Number of successful extensions: 3802
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3801
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11048563978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)