Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_I04
(865 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c... 163 4e-41
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 28 1.5
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 27 3.4
SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces ... 27 3.4
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual 27 4.5
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 27 4.5
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom... 27 4.5
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 27 4.5
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 26 6.0
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 26 6.0
>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 298
Score = 163 bits (395), Expect = 4e-41
Identities = 73/134 (54%), Positives = 100/134 (74%)
Frame = +1
Query: 430 LKTNWFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKD 609
+K WF E +MWPG + +VK+VL+ KSKYQ++ VF++ + G VLVLDG IQ T++D
Sbjct: 11 IKDGWFREINNMWPGQAMTLKVKKVLYAGKSKYQDVLVFESETYGHVLVLDGAIQATERD 70
Query: 610 EFSYQEMISFLPLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIELSKR 789
EFSYQEMI+ L L H NP+ VL++GGGDGGV REV KH V+ +L +ID+ VI++SK+
Sbjct: 71 EFSYQEMIAHLALNSHPNPKKVLVIGGGDGGVLREVVKHECVEEAILCDIDEDVIKVSKQ 130
Query: 790 YLPFMAVGFDSPKL 831
YLP M+ GF+ PK+
Sbjct: 131 YLPEMSAGFNHPKV 144
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +1
Query: 601 QKDEFSYQEMISFLPLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIEL 780
QK ++Y+ M F+P H + +A +AKH H++ + D VIEL
Sbjct: 788 QKGLYAYEHMFQFIPR--HTLAIQAICQAHRSYSMAVRLAKHWFYSHLLTDHVTDEVIEL 845
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 503 YCTQKNQNTRISKFLIQPVWGRFLSWTESYN 595
+CTQK + +SKF P R + TE+ N
Sbjct: 20 FCTQKLHRSTVSKFFEHPTSKRSIGVTENGN 50
>SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 27.1 bits (57), Expect = 3.4
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +1
Query: 550 TTSLGKVLVLDGIIQCTQKDEFSYQEMISFLPLCCHK-NPENVLIVGGGD-GGVAREVAK 723
TTS K +V +G + D F+ + S L C NV+IVGGGD VA++ K
Sbjct: 326 TTS--KTIVWNGPAGVFEFDNFA-KGTKSMLDACVKTCEAGNVVIVGGGDTATVAKKYGK 382
Query: 724 HPQVKHI 744
+ H+
Sbjct: 383 EDALSHV 389
>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 450
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = +1
Query: 463 MWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKD 609
+W G + +K +L K K N+ FD L V+ +++ + D
Sbjct: 55 LWDGHVWIGSLKNILIYLKQKGYNLDNFDAKQLANVMAFTSLLEGSVND 103
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -3
Query: 608 SF*VHCMI-PSKTRTFPKLVVSKTWIFWY 525
SF V +I PS+T K V KTW +W+
Sbjct: 806 SFSVLSLICPSRTLIIDKACVEKTWPYWW 834
>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 464
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +1
Query: 676 LIVGGGDGGV--AREVAKHPQVKHIVLVEIDDRV 771
L++GGG GG+ AR AKH + L+E R+
Sbjct: 11 LVIGGGSGGLASARRAAKHG--AKVALIEASGRL 42
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +1
Query: 619 YQEMISFLPLCCHKN---PENVLIVGGGDGGVAREVAK 723
Y++++S L L +N PE VLIV +G + RE K
Sbjct: 410 YKDILSTLRLVMIENMVKPEEVLIVENDEGEIVREFVK 447
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 790 YLPFMAVGFDSPKLLFMWVTVLNL 861
Y M + FD+P++L W + LNL
Sbjct: 112 YWRSMCIQFDNPEMLSQWASNLNL 135
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 26.2 bits (55), Expect = 6.0
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +1
Query: 514 EKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFLPLCCHKNPENVLIV 684
+K+K + D SLG + +I C K + +I + L CH PE VL V
Sbjct: 190 QKTKPTQQAIRDLRSLG---ITPDLIACRCKQPLE-KSVIDKISLFCHVGPEQVLAV 242
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,637,915
Number of Sequences: 5004
Number of extensions: 77657
Number of successful extensions: 210
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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