Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_I04
(865 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110485-13|CAB60361.2| 314|Caenorhabditis elegans Hypothetical... 161 6e-40
AJ306734-1|CAC37332.1| 314|Caenorhabditis elegans spermidine sy... 161 6e-40
U82936-1|AAB40869.1| 682|Caenorhabditis elegans protein kinase ... 29 4.3
U82935-1|AAB40868.1| 680|Caenorhabditis elegans protein kinase ... 29 4.3
U29376-5|AAA68709.2| 936|Caenorhabditis elegans Protein kinase ... 29 4.3
U29376-4|AAM51504.1| 682|Caenorhabditis elegans Protein kinase ... 29 4.3
U29376-3|AAM51503.1| 680|Caenorhabditis elegans Protein kinase ... 29 4.3
Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical p... 29 5.7
Z81124-11|CAB03370.2| 306|Caenorhabditis elegans Hypothetical p... 23 6.7
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr... 28 7.5
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p... 28 7.5
>AL110485-13|CAB60361.2| 314|Caenorhabditis elegans Hypothetical
protein Y46G5A.19 protein.
Length = 314
Score = 161 bits (391), Expect = 6e-40
Identities = 69/122 (56%), Positives = 96/122 (78%)
Frame = +1
Query: 466 WPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFLP 645
WPG FS +VK+VL EKSKYQ++ VF++T+ G VLVLDGI+Q T++DEFSYQEM++ LP
Sbjct: 43 WPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLP 102
Query: 646 LCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIELSKRYLPFMAVGFDSP 825
+ H +P+ VLI+GGGDGG+ REV KH V+ + + EID+ VI+++K++LP M+ GF P
Sbjct: 103 MFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHP 162
Query: 826 KL 831
KL
Sbjct: 163 KL 164
>AJ306734-1|CAC37332.1| 314|Caenorhabditis elegans spermidine
synthase protein.
Length = 314
Score = 161 bits (391), Expect = 6e-40
Identities = 69/122 (56%), Positives = 96/122 (78%)
Frame = +1
Query: 466 WPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFLP 645
WPG FS +VK+VL EKSKYQ++ VF++T+ G VLVLDGI+Q T++DEFSYQEM++ LP
Sbjct: 43 WPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLP 102
Query: 646 LCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIELSKRYLPFMAVGFDSP 825
+ H +P+ VLI+GGGDGG+ REV KH V+ + + EID+ VI+++K++LP M+ GF P
Sbjct: 103 MFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHP 162
Query: 826 KL 831
KL
Sbjct: 163 KL 164
>U82936-1|AAB40869.1| 682|Caenorhabditis elegans protein kinase C2
B isoform protein.
Length = 682
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 622 QEMISFLPLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIE 777
+E +S KNP L G D +R++ +HP + I +I+ R I+
Sbjct: 572 KEAVSLCKALLIKNPSKRLGCTGDDESASRDIKEHPFFRRIDWFKIETRQIQ 623
>U82935-1|AAB40868.1| 680|Caenorhabditis elegans protein kinase C2
A isoform protein.
Length = 680
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 622 QEMISFLPLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIE 777
+E +S KNP L G D +R++ +HP + I +I+ R I+
Sbjct: 572 KEAVSLCKALLIKNPSKRLGCTGDDESASRDIKEHPFFRRIDWFKIETRQIQ 623
>U29376-5|AAA68709.2| 936|Caenorhabditis elegans Protein kinase c
protein 2, isoformc protein.
Length = 936
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 622 QEMISFLPLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIE 777
+E +S KNP L G D +R++ +HP + I +I+ R I+
Sbjct: 712 KEAVSLCKALLIKNPSKRLGCTGDDESASRDIKEHPFFRRIDWFKIETRQIQ 763
>U29376-4|AAM51504.1| 682|Caenorhabditis elegans Protein kinase c
protein 2, isoformb protein.
Length = 682
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 622 QEMISFLPLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIE 777
+E +S KNP L G D +R++ +HP + I +I+ R I+
Sbjct: 572 KEAVSLCKALLIKNPSKRLGCTGDDESASRDIKEHPFFRRIDWFKIETRQIQ 623
>U29376-3|AAM51503.1| 680|Caenorhabditis elegans Protein kinase c
protein 2, isoforma protein.
Length = 680
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 622 QEMISFLPLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIE 777
+E +S KNP L G D +R++ +HP + I +I+ R I+
Sbjct: 572 KEAVSLCKALLIKNPSKRLGCTGDDESASRDIKEHPFFRRIDWFKIETRQIQ 623
>Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical
protein C54D10.6 protein.
Length = 348
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +1
Query: 400 NY*SKKKMDKLKTNWFTESCDMWPGGTFSFEVKEV 504
N ++ ++K+ NW CD+W T F V+++
Sbjct: 161 NVEDRESIEKIVDNWRNAPCDIWNENTVVFSVQKL 195
>Z81124-11|CAB03370.2| 306|Caenorhabditis elegans Hypothetical
protein T21B4.1 protein.
Length = 306
Score = 23.4 bits (48), Expect(2) = 6.7
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 367 LILDFNCRLGTNY*SKKKMDKLKTNW 444
++L +N +GT + S++K+ L NW
Sbjct: 221 VLLFYNQIIGTKFASERKIGMLLQNW 246
Score = 23.4 bits (48), Expect(2) = 6.7
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +1
Query: 529 QNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFLPLCCHKNPENVLIVGGGDG 699
QN F TT L ++ + C +++ + M+S L C N ++VG +G
Sbjct: 244 QNWSNFGTTPL---IIQISYLLCNKRNTRAIMVMLSPRRLICRNCRRNQVVVGPAEG 297
>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
F18C12.2b protein.
Length = 2271
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +1
Query: 442 WFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQ-----CTQK 606
W+ D G SFE + L+TEK+ ++ Q++ + K + L + Q C QK
Sbjct: 983 WYYHDKDAKQVGPLSFEKMKSLYTEKTIFEKSQIW-AAGMDKWMSLAAVPQFRWTVCQQK 1041
Query: 607 DE 612
D+
Sbjct: 1042 DQ 1043
>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
F18C12.2a protein.
Length = 2279
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +1
Query: 442 WFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQ-----CTQK 606
W+ D G SFE + L+TEK+ ++ Q++ + K + L + Q C QK
Sbjct: 983 WYYHDKDAKQVGPLSFEKMKSLYTEKTIFEKSQIW-AAGMDKWMSLAAVPQFRWTVCQQK 1041
Query: 607 DE 612
D+
Sbjct: 1042 DQ 1043
>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
protein RME-8 protein.
Length = 2279
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +1
Query: 442 WFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQ-----CTQK 606
W+ D G SFE + L+TEK+ ++ Q++ + K + L + Q C QK
Sbjct: 983 WYYHDKDAKQVGPLSFEKMKSLYTEKTIFEKSQIW-AAGMDKWMSLAAVPQFRWTVCQQK 1041
Query: 607 DE 612
D+
Sbjct: 1042 DQ 1043
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,888,837
Number of Sequences: 27780
Number of extensions: 427421
Number of successful extensions: 1045
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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