Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_I02
         (981 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0022 - 135655-135717,137426-137482,137559-137678,137762-13...   134   8e-32
03_02_0318 + 7417361-7417519,7417638-7417690,7417770-7417836,741...   134   1e-31
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856...    53   3e-07
04_04_0192 - 23471346-23471572,23473004-23473195,23474342-234744...    51   2e-06
02_04_0403 - 22622014-22622075,22622159-22622350,22624834-226249...    44   2e-04
05_04_0375 + 20750170-20751011,20751707-20751865,20752894-207531...    28   9.9  

>02_01_0022 -
           135655-135717,137426-137482,137559-137678,137762-137920
          Length = 132

 Score =  134 bits (325), Expect = 8e-32
 Identities = 56/87 (64%), Positives = 75/87 (86%)
 Frame = +3

Query: 180 VNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQL 359
           ++ S+G+P+K+LHEA GHVVT E  TGEVYRG ++E EDN NCQ+  +T T +DG+V+QL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVTVELKTGEVYRGSMVECEDNWNCQLDNITFTAKDGKVSQL 60

Query: 360 ENVYIRGSKIRFLILPDMLKNAPMFKR 440
           E+V+IRGS++RF+I+PDMLKNAPMFKR
Sbjct: 61  EHVFIRGSRVRFMIIPDMLKNAPMFKR 87


>03_02_0318 +
           7417361-7417519,7417638-7417690,7417770-7417836,
           7417925-7417981,7420005-7420067
          Length = 132

 Score =  134 bits (324), Expect = 1e-31
 Identities = 56/87 (64%), Positives = 75/87 (86%)
 Frame = +3

Query: 180 VNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQL 359
           ++ S+G+P+K+LHEA GHVVT E  TGEVYRG ++E EDN NCQ+  +T T +DG+V+QL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVTVELKTGEVYRGAMVECEDNWNCQLDNITFTAKDGKVSQL 60

Query: 360 ENVYIRGSKIRFLILPDMLKNAPMFKR 440
           E+V+IRGS++RF+I+PDMLKNAPMFKR
Sbjct: 61  EHVFIRGSRVRFMIIPDMLKNAPMFKR 87


>01_01_1089 -
           8560008-8560220,8560456-8560977,8561095-8561283,
           8561377-8561642,8561967-8562111,8562411-8562530,
           8562611-8562930,8564161-8564341,8564434-8564580,
           8565186-8565497,8566303-8566450,8566592-8566765,
           8567385-8567446,8567499-8567571,8567628-8567683,
           8568370-8568645,8569541-8569588,8569870-8569991,
           8570258-8570413,8571037-8571079,8572624-8572701,
           8572972-8573070,8573168-8573209,8573302-8573304
          Length = 1264

 Score = 53.2 bits (122), Expect = 3e-07
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
 Frame = +3

Query: 198 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDG-RVAQLENVYI 374
           +P+ +L  A+GH +  E   GE Y G L+  +  MN  +  V  T +DG +  ++   YI
Sbjct: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYI 61

Query: 375 RGSKIRFLILPD 410
           RG+ I++L +PD
Sbjct: 62  RGNTIKYLRVPD 73


>04_04_0192 -
           23471346-23471572,23473004-23473195,23474342-23474418,
           23475810-23475850,23475928-23475974,23476108-23476194,
           23476807-23477011,23477747-23477866
          Length = 331

 Score = 50.8 bits (116), Expect = 2e-06
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
 Frame = +3

Query: 156 SYVFLN*NVNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTY 335
           +Y+  N  +  +    ++ L +     VT E   G V  G +   + +MN  +  V +T 
Sbjct: 150 AYILTNRILPWAFYASLRFLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTL 209

Query: 336 RDGRVAQLENVYIRGSKIRFLILPDMLKNAPMF-----KRQGNKPTAGRGKSAI 482
           +      L+++ +RG+ IR+ ILPD L    +      + +  KPTAGR   A+
Sbjct: 210 KGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEDTPRVKAKKPTAGRAAWAV 263


>02_04_0403 -
           22622014-22622075,22622159-22622350,22624834-22624910,
           22625026-22625039
          Length = 114

 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
 Frame = +3

Query: 204 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGS 383
           ++ L +     VT E   G    G +   + +MN  +  V +T +       +++ +RG+
Sbjct: 4   VRFLMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTLKGKNPVTFDHLSVRGN 63

Query: 384 KIRFLILPDMLKNAPMF-----KRQGNKPTAGR 467
            IR+ ILPD L    +      + +  KPTAG+
Sbjct: 64  NIRYYILPDSLNLETLLVEDTPRVKAKKPTAGK 96


>05_04_0375 +
           20750170-20751011,20751707-20751865,20752894-20753146,
           20753287-20753316
          Length = 427

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +2

Query: 488 SPSCWSRTSRWKRWGPPWRLARWVRTISTLALRYFLDSLSCTCLIFQLSRNYFIIIYLXR 667
           SP   ++  RW  W  P   A    ++  +AL +FL S++   L+   +   ++  YL R
Sbjct: 26  SPRVSAQRRRWWWWAAPLPSASGASSLERVALAFFLASVA---LVLSCALYLYVFRYLGR 82

Query: 668 T*AXXXF 688
             A   F
Sbjct: 83  GSAVAGF 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,236,138
Number of Sequences: 37544
Number of extensions: 285247
Number of successful extensions: 779
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2858396560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)