Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_I02
(981 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117204-26|CAB55132.1| 136|Caenorhabditis elegans Hypothetical... 144 6e-35
U23937-1|AAA65451.1| 71|Caenorhabditis elegans small nuclear r... 113 1e-25
U20864-9|AAC46661.1| 123|Caenorhabditis elegans Lsm sm-like pro... 50 3e-06
U28738-8|AAA68313.1| 126|Caenorhabditis elegans Small nuclear r... 42 9e-04
Z75546-7|CAA99895.1| 566|Caenorhabditis elegans Hypothetical pr... 29 5.1
L14429-11|AAA28212.1| 85|Caenorhabditis elegans Small nuclear ... 29 6.7
U39849-4|AAA81047.1| 349|Caenorhabditis elegans Hypothetical pr... 28 8.8
L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical pr... 28 8.8
L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical pr... 28 8.8
>AL117204-26|CAB55132.1| 136|Caenorhabditis elegans Hypothetical
protein Y116A8C.42 protein.
Length = 136
Score = 144 bits (350), Expect = 6e-35
Identities = 66/86 (76%), Positives = 75/86 (87%)
Frame = +3
Query: 189 SIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENV 368
S+GVPIK+LHEAEGH+VT ET TGEVYRGKL EAEDNMNCQ+ VT+RDGR QL+NV
Sbjct: 3 SVGVPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNV 62
Query: 369 YIRGSKIRFLILPDMLKNAPMFKRQG 446
+IRG+KIRF+ILPDMLKNAPMFK G
Sbjct: 63 FIRGNKIRFMILPDMLKNAPMFKNIG 88
>U23937-1|AAA65451.1| 71|Caenorhabditis elegans small nuclear
ribonucleoprotein protein.
Length = 71
Score = 113 bits (273), Expect = 1e-25
Identities = 52/69 (75%), Positives = 59/69 (85%)
Frame = +3
Query: 231 HVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGSKIRFLILPD 410
H+VT ET TGEVYRGKL EAEDNMNCQ+ VT+RDGR QL+NV+IRG+KIRF+ILPD
Sbjct: 3 HMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKIRFMILPD 62
Query: 411 MLKNAPMFK 437
MLKNAP FK
Sbjct: 63 MLKNAPXFK 71
>U20864-9|AAC46661.1| 123|Caenorhabditis elegans Lsm sm-like
protein protein 4 protein.
Length = 123
Score = 49.6 bits (113), Expect = 3e-06
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Frame = +3
Query: 198 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDG-RVAQLENVYI 374
+P+ +L A+ H + E GE Y G L + MN + V T +DG + ++ Y+
Sbjct: 3 LPLSLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYV 62
Query: 375 RGSKIRFLILP----DMLKNA--PMFKRQGNKPTAGRG 470
RGS I++L +P D++K + ++Q + + GRG
Sbjct: 63 RGSTIKYLRIPETVVDLVKTEVNEVRRQQQREQSRGRG 100
>U28738-8|AAA68313.1| 126|Caenorhabditis elegans Small nuclear
ribonucleoproteinprotein 3 protein.
Length = 126
Score = 41.5 bits (93), Expect = 9e-04
Identities = 20/71 (28%), Positives = 37/71 (52%)
Frame = +3
Query: 204 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGS 383
++ L + V E G G ++ + MN + V++T ++ +L+ + IRG+
Sbjct: 4 VRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSIRGN 63
Query: 384 KIRFLILPDML 416
IR++ILPD L
Sbjct: 64 NIRYIILPDPL 74
>Z75546-7|CAA99895.1| 566|Caenorhabditis elegans Hypothetical
protein R05D11.8 protein.
Length = 566
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 228 GHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTV 329
G V++ ET G VY+GKL + N N +T+ V
Sbjct: 7 GSVISTETKDGNVYQGKLTTYDTN-NGNLTMANV 39
>L14429-11|AAA28212.1| 85|Caenorhabditis elegans Small nuclear
ribonucleoproteinprotein 5 protein.
Length = 85
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +3
Query: 201 PIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGR-VAQLENVYIR 377
P L+ G V C+ G Y+G L+ + MN Q+ Y DG L + IR
Sbjct: 9 PKPFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAE-EYIDGNSQGNLGEILIR 67
Query: 378 GSKIRFL 398
+ + ++
Sbjct: 68 CNNVLYV 74
>U39849-4|AAA81047.1| 349|Caenorhabditis elegans Hypothetical
protein C06A8.6 protein.
Length = 349
Score = 28.3 bits (60), Expect = 8.8
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +3
Query: 267 YRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENV 368
+R LI+ +N++C TL + + D ++ ++EN+
Sbjct: 61 FRWNLIKKIENLDCLTTLTHLEFYDNQITKVENL 94
>L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical
protein ZK688.5b protein.
Length = 1595
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 311 NDSRNSHIQRWPSCTARECV 370
N+S ++ IQ P CT RECV
Sbjct: 710 NESWDTRIQNMPLCTLRECV 729
>L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical
protein ZK688.5a protein.
Length = 1620
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 311 NDSRNSHIQRWPSCTARECV 370
N+S ++ IQ P CT RECV
Sbjct: 710 NESWDTRIQNMPLCTLRECV 729
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,694,486
Number of Sequences: 27780
Number of extensions: 270165
Number of successful extensions: 719
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2552786072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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