Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_H23
(859 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 273 2e-74
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 136 3e-33
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 122 5e-29
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 116 6e-27
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 95 1e-20
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 77 3e-15
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 73 5e-14
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 70 4e-13
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 2e-05
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 28 2.0
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 2.0
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 26 6.0
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 7.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 273 bits (669), Expect = 2e-74
Identities = 126/141 (89%), Positives = 132/141 (93%)
Frame = +1
Query: 49 SLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLY 228
SLEKSYELPDGQVITIGNERFR PEALFQPS LG+E GIHE TYNSIMKCDVDIRKDLY
Sbjct: 235 SLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLY 294
Query: 229 ANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQ 408
N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQ
Sbjct: 295 GNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQ 354
Query: 409 MWISKQEYDESGPSIVHRKCF 471
MWISKQEYDESGP IV+RKCF
Sbjct: 355 MWISKQEYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 136 bits (330), Expect = 3e-33
Identities = 61/137 (44%), Positives = 93/137 (67%)
Frame = +1
Query: 61 SYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTV 240
+Y+LPD Q IT+G E F PE LF P +G EA G+H + SI+ D+D+R LY+N V
Sbjct: 244 TYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIV 303
Query: 241 LSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 420
LSGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+
Sbjct: 304 LSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLIT 363
Query: 421 KQEYDESGPSIVHRKCF 471
+EY ++ +++ R+ F
Sbjct: 364 SEEY-KNDQNVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 122 bits (295), Expect = 5e-29
Identities = 63/143 (44%), Positives = 93/143 (65%), Gaps = 12/143 (8%)
Frame = +1
Query: 52 LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYA 231
L ++Y LPDG+VI +G+ER+ CPE LFQP +G E G+ E +++I DVDIRK LY
Sbjct: 236 LMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYR 295
Query: 232 NTVLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGS 378
VLSGG++MY G+ R++KEI L P+ + K+KI P R+++V+IGG+
Sbjct: 296 AIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGA 355
Query: 379 ILAS-LSTFQQMWISKQEYDESG 444
+LA ++ MW+SK E++E G
Sbjct: 356 VLADIMAQNDHMWVSKAEWEEYG 378
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 116 bits (278), Expect = 6e-27
Identities = 60/140 (42%), Positives = 80/140 (57%), Gaps = 11/140 (7%)
Frame = +1
Query: 58 KSYELPDGQVITIGNERFRCPEALFQPSFLGMEAC---------GIHETTYNSIMKCDVD 210
K +E PDG G ERFR E LF PSF + G+HE Y SI+ CD +
Sbjct: 279 KPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSE 338
Query: 211 IRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII-APPERKYSVWIGGSIL 384
+R L N V++GGT++ PG+++R+Q E+ LA S + + +VW GGSIL
Sbjct: 339 LRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSIL 398
Query: 385 ASLSTFQQMWISKQEYDESG 444
ASL FQ +W+SKQEYDE G
Sbjct: 399 ASLDNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 95.1 bits (226), Expect = 1e-20
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
Frame = +1
Query: 163 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 342
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 343 P---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 468
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 77.0 bits (181), Expect = 3e-15
Identities = 42/128 (32%), Positives = 64/128 (50%)
Frame = +1
Query: 82 QVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTM 261
QV+ + NERF PE LF PS + + GI E S+ +I+ L N V GG
Sbjct: 272 QVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCK 331
Query: 262 YPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDES 441
+PG R+ E+ +LAP+ ++K+ P + W S + L + I++ EY E
Sbjct: 332 FPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEH 390
Query: 442 GPSIVHRK 465
G +I+ RK
Sbjct: 391 GANIMTRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 72.9 bits (171), Expect = 5e-14
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 15/140 (10%)
Frame = +1
Query: 88 ITIGNERFRCPEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 264
I +G ERF PE F P + + E N + +D+RK LY N VLSGG+T++
Sbjct: 280 IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLF 339
Query: 265 PGIADRMQKEITALAPST--------------MKIKIIAPPERKYSVWIGGSILASLSTF 402
+R+Q+++ + + + +I+ ++ +VW GGS+LA F
Sbjct: 340 KNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEF 399
Query: 403 QQMWISKQEYDESGPSIVHR 462
+K +Y+E G SI R
Sbjct: 400 GSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 70.1 bits (164), Expect = 4e-13
Identities = 31/118 (26%), Positives = 62/118 (52%)
Frame = +1
Query: 103 ERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 282
E+ R PE +F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 283 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 456
+++E+T++ P I + W G S + F+ ++++EY E GP +
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +1
Query: 217 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 387
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 388 SLSTFQQMWISKQEYDESGPSIVHRK 465
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 246 RWYHHVPWNRRPYAKGNHSSRPIDNEDKDHCSSREEVLRMDRWIDPRLPLYLPTNVDLET 425
RWY PW + KG+ + +E K+ SSR + + W+D YL + +D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 426 RV 431
V
Sbjct: 534 AV 535
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = +1
Query: 364 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 465
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 26.2 bits (55), Expect = 6.0
Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 1/111 (0%)
Frame = +1
Query: 31 NP*DFCSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG-MEACGIHETTYNSIMKCDV 207
N DF E E + ++T+ NE + E L S + E+ + CD+
Sbjct: 120 NDKDFAYFEDKSE--NQPLVTLPNENNQVIEPLSSQSCKSQLSTQNYSESDFGWNQLCDL 177
Query: 208 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYS 360
D ++ + + T ++P AD I ++K A RKYS
Sbjct: 178 D---PIFKSLAFTDDTNLFPAFADSEAALIMLKKREMTRVKHRAGRPRKYS 225
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 289 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 399
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,987,430
Number of Sequences: 5004
Number of extensions: 62274
Number of successful extensions: 189
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -