Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_H22
         (907 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-12|AAK29854.2|  237|Caenorhabditis elegans Hypothetical p...    31   1.5  
AF143152-1|AAD37863.1|  237|Caenorhabditis elegans putative NADH...    31   1.5  
U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AF100307-5|AAC68933.2|  316|Caenorhabditis elegans Hypothetical ...    30   2.0  

>U00036-12|AAK29854.2|  237|Caenorhabditis elegans Hypothetical
           protein R151.6 protein.
          Length = 237

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = -2

Query: 339 HVRIFTPRFDLLGKFILIPIVQFYELIWSFCFTFSF*FNRLRIQL*YTIEFFCICLQE 166
           H+   TP        ++I   QF+ LI SFCF  SF F+ L   + +T   +C+ L+E
Sbjct: 30  HLEFVTPFHLYFNWELIIRKYQFWRLITSFCFFGSFGFSFL-FNMIFTYR-YCMMLEE 85


>AF143152-1|AAD37863.1|  237|Caenorhabditis elegans putative NADH
           oxidoreductase complexI subunit protein.
          Length = 237

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = -2

Query: 339 HVRIFTPRFDLLGKFILIPIVQFYELIWSFCFTFSF*FNRLRIQL*YTIEFFCICLQE 166
           H+   TP        ++I   QF+ LI SFCF  SF F+ L   + +T   +C+ L+E
Sbjct: 30  HLEFVTPFHLYFNWELIIRKYQFWRLITSFCFFGSFGFSFL-FNMIFTYR-YCMMLEE 85


>U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical
           protein D1044.6 protein.
          Length = 1009

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 22/61 (36%), Positives = 29/61 (47%)
 Frame = -1

Query: 217 EDTTLIHYRILLHLPPRKKVDVSFVVAIVNVLNVQHCVFSLTTAPNSTRRQAPGQTXNLK 38
           EDT +   RI L LPP+ K  V  +V + N  N    V + T   N    Q P +T N+ 
Sbjct: 559 EDTYITRNRIPLKLPPKVKQAVPALV-VRNSNNATRTVVAATVNENGI--QWPAETINID 615

Query: 37  E 35
           E
Sbjct: 616 E 616


>AF100307-5|AAC68933.2|  316|Caenorhabditis elegans Hypothetical
           protein T12B5.8 protein.
          Length = 316

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
 Frame = +1

Query: 145 RKTRLLSFLEANAKEFDSVLKLYP--QAIKLKA-ERKTKRPDELIKLDNWYQNELPKKIK 315
           RK  +++F +       + +K++   + I +K  +  T   DE++ + +W+ ++  K I+
Sbjct: 122 RKNYIVNFTKNRCDIVTTFIKIFKAEKCIHVKEIDLSTFGFDEVLTILSWFDSKELKTIE 181

Query: 316 SRGKDAHMIHEELVQLMKWKQA 381
            R  D+    E + QL +WK A
Sbjct: 182 LRWMDSIDRFERITQLEQWKNA 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,368,960
Number of Sequences: 27780
Number of extensions: 440444
Number of successful extensions: 1189
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)