Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_H21
         (1113 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    36   0.008
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.29 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    29   0.88 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.88 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   0.88 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    23   1.8  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   4.7  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   6.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 36.3 bits (80), Expect = 0.008
 Identities = 17/53 (32%), Positives = 18/53 (33%)
 Frame = +1

Query: 787 TPPPPXXXXXXXXGXXXPXKKKKKXXXXPPPPPPPPPXXXGGXXXGXXXPPPP 945
           +PPPP            P            PPPPPPP    G       PPPP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 30.7 bits (66), Expect = 0.38
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 871 PPPPPPPPPXXXGG 912
           PPPPPPPPP    G
Sbjct: 775 PPPPPPPPPAVSAG 788



 Score = 29.9 bits (64), Expect = 0.67
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 871 PPPPPPPPPXXXGG 912
           PPPPPPPP    GG
Sbjct: 776 PPPPPPPPAVSAGG 789



 Score = 27.5 bits (58), Expect = 3.6
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +1

Query: 874 PPPPPPPPXXXGGXXXGXXXPPP 942
           PPPPPPPP            P P
Sbjct: 775 PPPPPPPPPAVSAGGSRYYAPAP 797


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.29
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 871 PPPPPPPPPXXXGGXXXGXXXPPPP 945
           PP  PPPPP   G        PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 29.5 bits (63), Expect = 0.88
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +1

Query: 871 PPPPPPPPP 897
           PPPPPPPPP
Sbjct: 306 PPPPPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.5 bits (63), Expect = 0.88
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +1

Query: 871 PPPPPPPPP 897
           PPPPPPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 27.9 bits (59), Expect = 2.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 838 PXKKKKKXXXXPPPPPPPPP 897
           P    K+    P PPPPPPP
Sbjct: 225 PTYTPKQADPLPAPPPPPPP 244


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 29.5 bits (63), Expect = 0.88
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +1

Query: 871 PPPPPPPPP 897
           PPPPPPPPP
Sbjct: 945 PPPPPPPPP 953



 Score = 23.4 bits (48), Expect(2) = 2.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 871 PPPPPPPP 894
           P PPPPPP
Sbjct: 905 PTPPPPPP 912



 Score = 22.6 bits (46), Expect(2) = 2.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 874 PPPPPPPP 897
           PPPPPP P
Sbjct: 907 PPPPPPLP 914


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 12/36 (33%), Positives = 13/36 (36%)
 Frame = +1

Query: 790 PPPPXXXXXXXXGXXXPXKKKKKXXXXPPPPPPPPP 897
           PPPP        G   P     +    PP PPP  P
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396



 Score = 27.5 bits (58), Expect = 3.6
 Identities = 16/54 (29%), Positives = 16/54 (29%), Gaps = 2/54 (3%)
 Frame = +1

Query: 790 PPPPXXXXXXXXGXXXPXKKKKKXXXXPPPPPPPPPXXXG--GXXXGXXXPPPP 945
           PPPP        G              PPPPPP             G   PPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 23.4 bits (48), Expect(2) = 1.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 871 PPPPPPPP 894
           P PPPPPP
Sbjct: 3   PAPPPPPP 10



 Score = 23.4 bits (48), Expect(2) = 1.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 874 PPPPPPPP 897
           PPPPPP P
Sbjct: 5   PPPPPPAP 12


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 856  KXXXXPPPPPPPP 894
            K    PPPPPPPP
Sbjct: 1090 KPSAVPPPPPPPP 1102



 Score = 26.6 bits (56), Expect = 6.2
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 874  PPPPPPPP 897
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 871 PPPPPPPP 894
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377



 Score = 26.6 bits (56), Expect = 6.2
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 874 PPPPPPPP 897
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,868,329
Number of Sequences: 5004
Number of extensions: 20537
Number of successful extensions: 295
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 589685872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)