Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_H20
(875 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 36 0.008
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 32 0.093
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 29 1.1
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 28 1.5
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 28 1.5
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 3.5
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 27 4.6
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 6.1
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 26 6.1
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 26 8.1
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 26 8.1
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 26 8.1
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 35.9 bits (79), Expect = 0.008
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Frame = +2
Query: 365 NLEKYSSLHKMSTADENTSTLLGVLKHISTELTFEEQI------ELNEVFLQKIQNKLPV 526
NL+KYSS + A TS L VL+H+ +E + E + N VF Q +
Sbjct: 286 NLKKYSSFLALKEAVSMTSEQLRVLEHLLSECSHEINVLSQQSKNFNGVFESSYQPLIND 345
Query: 527 LVTQLEQLKLSRHTSNESKKEXIKALKESIDTKLNK 634
L Q+ ++ N +K E +L++ ++ K K
Sbjct: 346 LDHQISVMQNDEKRINNAKTELSLSLEKKLEAKKQK 381
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 32.3 bits (70), Expect = 0.093
Identities = 33/157 (21%), Positives = 70/157 (44%), Gaps = 3/157 (1%)
Frame = +2
Query: 188 QVLAIKQKNKMEITTNSEYSAEKNSIKENFLLDMIKEVCSEQILXXXXXXXXXXXXQECN 367
Q+ + + + + TN+E S KNS++ L + +E ++ ++ + +
Sbjct: 554 QLSTLAAEKEAAVATNNELSESKNSLQT--LCNAFQEKLAKSVMQLKENEQNFSSL-DTS 610
Query: 368 LEKYSSLHKMSTADENTSTLLGVLKHISTELTFEEQIELNEVFLQKIQNKLPVLVTQLEQ 547
+K + H+ + N T+ LK S++L +Q++L ++ ++ L L
Sbjct: 611 FKKLNESHQ--ELENNHQTITKQLKDTSSKL---QQLQLERANFEQKESTLSDENNDLRT 665
Query: 548 LKLSRHTSNES---KKEXIKALKESIDTKLNKLNDQE 649
L SN+S K+E + +L+++I T L E
Sbjct: 666 KLLKLEESNKSLIKKQEDVDSLEKNIQTLKEDLRKSE 702
Score = 26.2 bits (55), Expect = 6.1
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +2
Query: 434 VLKHISTELTFEEQIELNEVFLQKIQNKLPVLVTQ-LEQLKLSRHTSNESKKEXIKALKE 610
+++ +ST ++ + ++ L KL L+ + LK SR TSN +E + LKE
Sbjct: 320 LIEDLSTRISEFDNLKSERDTLSIKNEKLEKLLRNTIGSLKDSR-TSNSQLEEEMVELKE 378
Query: 611 SIDTKLNKLNDQENE 655
S T ++L D E++
Sbjct: 379 SNRTIHSQLTDAESK 393
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/55 (27%), Positives = 33/55 (60%)
Frame = +2
Query: 452 TELTFEEQIELNEVFLQKIQNKLPVLVTQLEQLKLSRHTSNESKKEXIKALKESI 616
TE+ EE++E +V Q++ + +L++ +L R N+ ++ +KAL+E++
Sbjct: 1493 TEIPNEEEMERKKVMQQEVLRLRSRIAKELQKNELLR-KQNQVLQDQVKALQETV 1546
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 28.3 bits (60), Expect = 1.5
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Frame = +2
Query: 392 KMSTADENTSTLLGVLKHISTELT-FEEQIELNEVFLQKIQNKLPVLVTQLEQLKLSRHT 568
KM D +L L+ + TE + ++ L + L K Q + ++L HT
Sbjct: 793 KMEATDMLNVSLHESLRSVQTENSELVTEMALLKAELVKKQAIIDANANIYDKLTAD-HT 851
Query: 569 SNESKKEXIKA-LKESIDTKLNKLNDQENEKVELM 670
+ E+ I LKE++D LN +D +N ++EL+
Sbjct: 852 NYETVSADINQNLKETLDKLLNGSSDFKNNEIELL 886
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 28.3 bits (60), Expect = 1.5
Identities = 23/99 (23%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Frame = +2
Query: 374 KYSSLHKMSTADENTSTLLGVLKHISTELTFEEQIELNEVFLQKIQNKLPVLVTQL-EQL 550
K + ++K+ DE + L + + F+ ++EL++ ++++Q + ++ ++
Sbjct: 73 KQTLINKVKAQDELLKKKVKELTAMKKTVPFKSEVELDK-HVKQLQAAVDSGTLKIVDEK 131
Query: 551 KLSRHTS--NESKKEXIK--ALKESIDTKLNKLNDQENE 655
K R S N ++K ++ AL+ SIDT N+LN+ ++
Sbjct: 132 KYLREISQCNRTRKSFVELNALQTSIDTIRNELNELRDQ 170
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.1 bits (57), Expect = 3.5
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Frame = +2
Query: 368 LEKYSSLHKMSTADENTSTLLGVLKHISTELTFEEQIELNEVFLQKIQNKLPVLVTQLEQ 547
LEK + L K E + L + + +EQ+ ++ +Q + ++L + +QLEQ
Sbjct: 722 LEKLNDLEKSLVLSERSKDELD-----ESYKSLQEQLASKKIEVQNVSSQLSICNSQLEQ 776
Query: 548 LKLSRHTSNESKKE--XIKALKESIDTKLNKLNDQ 646
S H + K E + ++K+ + L+ L +
Sbjct: 777 ---SNHIVDNLKSENLLLTSVKDKLKADLSNLESK 808
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 26.6 bits (56), Expect = 4.6
Identities = 21/100 (21%), Positives = 45/100 (45%)
Frame = +2
Query: 410 ENTSTLLGVLKHISTELTFEEQIELNEVFLQKIQNKLPVLVTQLEQLKLSRHTSNESKKE 589
E+T T +G ++ T E+ N+ + + + +T EQ + +SKK+
Sbjct: 235 EDTFTTIGPQNSLTVNSTIEKHKSDNKKTFGTLVSFVEPTITGSEQSDYRQIKIKKSKKK 294
Query: 590 XIKALKESIDTKLNKLNDQENEKVELMMGVAQP*AFRSVQ 709
K+ + +L+ N+ EN+ + ++ Q + SV+
Sbjct: 295 KSKSDRRKRLVELDAENENENDPSDFVLPNGQSNSDLSVE 334
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 482 LNEVFLQKIQNKLPVLVTQLEQLKLSRHTSNES 580
LNE+ + I K+PVL + + L + +T++ S
Sbjct: 955 LNELLIDDIDGKMPVLFKRFKNLSSAENTTSFS 987
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +2
Query: 509 QNKLPVLVTQLEQLKLSRHTSNESKK-EXIKALKESIDTKLNKLNDQEN 652
+++L V + ++LK + +SKK + ++ E ++ +LNKLN++ N
Sbjct: 701 ESELEVRLKAADELKKALDAELKSKKVDPGRSSMEQLEKRLNKLNERIN 749
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 25.8 bits (54), Expect = 8.1
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +2
Query: 425 LLGVLKHISTELTFEEQIELNEVFLQKIQNKLPVLVTQLEQLKLSRHTSNESKKEXIKAL 604
L VLK + T L + ++ VF ++ L+T+++Q L + E+ +AL
Sbjct: 10 LPNVLKRLETGLIIPQLKDILRVFGLRLSGTKAELITRIKQ--LIERIAIENNTTSWEAL 67
Query: 605 KESID 619
K++ID
Sbjct: 68 KKAID 72
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 8.1
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = +2
Query: 470 EQIELNEVFLQKIQNKLPVLVTQLEQL---KLSRHTSNESKKEXIKALKESIDTKLNK 634
E I++N + ++ + N+ + +LE L L N +K+ A+KE ++T+LNK
Sbjct: 430 EDIKINSLRVESLVNEY-LKTNRLECLPEDSLGEAVVNFVEKDDRDAIKECVETQLNK 486
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 133 YYSCIII*FACSLIFNIYPS-FSNKTKE 213
Y SC++ ++ +I+NIY S F NK E
Sbjct: 249 YPSCLVRVYSIGIIYNIYQSGFVNKKME 276
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,561,305
Number of Sequences: 5004
Number of extensions: 42576
Number of successful extensions: 126
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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