Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_H20
(875 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0106 + 18160018-18160243,18160423-18160470,18160816-181609... 32 0.52
04_04_0917 - 29404341-29404519,29404610-29404744,29404898-294052... 31 1.2
07_01_0748 - 5735420-5735593,5735735-5735953,5736353-5736532,573... 30 2.1
03_01_0448 - 3444608-3444814,3446419-3446497,3446567-3446691,344... 30 2.8
11_01_0442 - 3369827-3370168,3370608-3372616,3372953-3373277,337... 29 4.9
10_06_0102 + 10758601-10758948,10759051-10759257,10759349-107595... 29 4.9
02_01_0645 + 4820461-4820736,4821034-4821086,4821670-4821876,482... 29 6.5
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 28 8.5
>01_05_0106 +
18160018-18160243,18160423-18160470,18160816-18160974,
18162056-18162219,18162778-18162885,18163695-18163865,
18163945-18164478,18164574-18164648,18164724-18164852,
18164975-18165049,18165129-18165338,18165529-18165681,
18165763-18165986,18166305-18166422,18166518-18166656,
18166745-18166946,18166981-18167149,18167190-18167267,
18167268-18167408,18167717-18167819,18169024-18169324,
18169450-18169518,18169602-18169626,18170946-18170975
Length = 1216
Score = 32.3 bits (70), Expect = 0.52
Identities = 21/95 (22%), Positives = 42/95 (44%)
Frame = +2
Query: 395 MSTADENTSTLLGVLKHISTELTFEEQIELNEVFLQKIQNKLPVLVTQLEQLKLSRHTSN 574
+S+ E + +L+ T L E + + L K + + L + + H
Sbjct: 227 LSSTTEAAEEKISILRENETLLKDNESLGAEKDALIKSREVANSQIAALRKSLEAAHKDI 286
Query: 575 ESKKEXIKALKESIDTKLNKLNDQENEKVELMMGV 679
+ K++ ++ LK+S+D + +LND E L M +
Sbjct: 287 KEKEKTVQDLKQSLDVQRKELNDCRAEITSLKMHI 321
>04_04_0917 -
29404341-29404519,29404610-29404744,29404898-29405225,
29405313-29405532,29405653-29406647,29407233-29407493,
29407534-29407872,29409309-29409497
Length = 881
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +2
Query: 389 HKMSTADENTSTLLGVLKHISTELTFEEQIELNEVFLQKIQNKLPVLVTQLEQLKL 556
+K ++N+S + LKH S + E++ LN L + + + V+ QL LKL
Sbjct: 260 YKPKVVEDNSSQVSQCLKHGSMDFLGLEKLNLNASQLNAVADCVSVMENQLSSLKL 315
>07_01_0748 -
5735420-5735593,5735735-5735953,5736353-5736532,
5736602-5736739,5736852-5737052,5737859-5737986,
5738114-5738189,5738354-5738503,5738594-5739115,
5739208-5739357,5739559-5739807,5740249-5740440,
5740890-5740937,5741589-5741717,5741821-5741935,
5742044-5742159,5742341-5742415,5742562-5742696
Length = 998
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +2
Query: 428 LGVLKHISTELTFEEQIELNEVFLQKIQNKLPVLVTQLEQLKLSRHTSNESKKEXIK 598
+G L HIS+E Q+ L QK+QN V +QL+ + +SK E K
Sbjct: 194 MGELSHISSEFDNVVQVVLENYRPQKMQNDGQVTKDSSDQLEQEAPKTEDSKAEDSK 250
>03_01_0448 -
3444608-3444814,3446419-3446497,3446567-3446691,
3446765-3446809,3447070-3447165,3447344-3447417,
3447526-3447649,3447975-3448109,3448206-3448535,
3448610-3448762,3448840-3449391,3449569-3449648,
3450395-3450506,3450579-3450749,3450820-3450879
Length = 780
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/48 (33%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Frame = +2
Query: 512 NKLPVLVTQLEQLKLSRHTSNESKKEXIKALKESI--DTKLNKLNDQE 649
+KLP L+T+ ++ SRH ESK + +L+E+I ++K +++N+++
Sbjct: 208 SKLPPLITEDYKI-YSRHKDGESKNISLISLQEAILEESKQSEINEED 254
>11_01_0442 -
3369827-3370168,3370608-3372616,3372953-3373277,
3373386-3373415
Length = 901
Score = 29.1 bits (62), Expect = 4.9
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Frame = +2
Query: 356 QECNLEKYSSL-HKM--STADENTSTLLGVLKHISTEL-TFEEQIELNEVFLQKIQNKLP 523
++ + E+ SL HK AD + +L L+ ++ IE E LQK +
Sbjct: 536 EQIDAERTLSLQHKAYADMADADKKSLEAQLQSAHADIGKLRGSIETLESELQKEKTMYE 595
Query: 524 VLVTQLEQLKL--SRHTSNESKKEXIKALKESIDTKLNKLNDQENE 655
LV Q+E +K+ + ES KE ++A +++++ KL+ N+
Sbjct: 596 ELVVQMESMKIESEKKLGVESAKEALEARLLVVNSEIAKLHGTVND 641
>10_06_0102 + 10758601-10758948,10759051-10759257,10759349-10759507,
10759617-10759709,10759913-10760008,10760457-10760724,
10760805-10761047,10761298-10761422,10761499-10761615,
10761705-10761779,10761886-10761942,10762035-10762139,
10762244-10762330,10762790-10763047,10763075-10763263,
10763418-10763528,10763640-10763729,10763814-10763990,
10764075-10764152,10764412-10764726,10764819-10765162,
10765304-10765541,10765631-10765998,10766106-10766316,
10766622-10766801,10766886-10769045,10769151-10769207
Length = 2251
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +2
Query: 536 QLEQLK---LSRHTSNESKKEXIKALKESIDTKLNKLNDQENEKV 661
QLE+LK +S+ S ++ +KAL + LNK+N + E+V
Sbjct: 2198 QLEELKAERVSKWLSRLAESPDVKALPNGLSIVLNKMNPSKREQV 2242
>02_01_0645 +
4820461-4820736,4821034-4821086,4821670-4821876,
4821975-4822055,4822137-4822302
Length = 260
Score = 28.7 bits (61), Expect = 6.5
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Frame = +2
Query: 455 ELTFEEQIELNEVFLQKIQNKLPVLVTQLEQLK----LSRHTSNE-SKKEXIKALKESID 619
ELT + +E ++ + K++ + V+Q E+ + R TS++ KKE ++ + I
Sbjct: 87 ELTAVQGVEKHDE-ISKVEKDSAIRVSQQEKERRRRWAQRRTSSKPDKKEPLEVEDKDIK 145
Query: 620 TKLNKLNDQENEKVELMMGV 679
K D+E+E+ M G+
Sbjct: 146 QKAENEEDEESEETHTMPGM 165
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 28.3 bits (60), Expect = 8.5
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 14/82 (17%)
Frame = +2
Query: 440 KHISTELTFEEQIELNEVFLQKIQN------KLPVLVTQLEQ--------LKLSRHTSNE 577
+H T+ F E E+N+ +KI+ +L V +LE+ L + R +NE
Sbjct: 1399 EHDQTKKAFSEAQEINQQLYRKIEEAEKNIEQLRENVERLEERIAYIDSLLAIERRENNE 1458
Query: 578 SKKEXIKALKESIDTKLNKLND 643
+KKE A KE I+ L+++ D
Sbjct: 1459 TKKELADAQKE-IEELLDEMQD 1479
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,332,173
Number of Sequences: 37544
Number of extensions: 203286
Number of successful extensions: 397
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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