Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_H18
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   1.2  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    28   2.0  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    28   2.0  
SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.6  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    27   3.6  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    26   6.2  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   8.2  

>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 255

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
 Frame = +2

Query: 503 SLTMIWMYTLRSVRYLVLHKGGKHVSLVT--YAPFGR---NRSMKVPIEDICCQERRTVA 667
           +LT+I     R++ Y +     +   +VT   +PF +   ++S+ VP +D+      ++ 
Sbjct: 159 TLTLILFLPRRNI-YSISTLPSQRFEIVTGFLSPFNKLYFSKSLIVPRKDVSIVTY-SLQ 216

Query: 668 KVQLPLKVRNRMMHYMLDMRGEF 736
           K  + LK+R+R  +Y+L+  G++
Sbjct: 217 KNPITLKIRDRPFYYLLNANGKY 239


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
 Frame = +3

Query: 225 ARTIHDVNTNVA-KDVI-LFKYENPSFYKYMNIFAVVQYA-FWMYLGIFSFSTLKDAPVD 395
           A+ +H  N ++   DV+ L   ENP   + ++I+ ++QYA F   L + S +T++    D
Sbjct: 59  AQMMHGENMSLYFPDVVKLVASENPEIRRLVHIY-LLQYAEFNPDLALLSVNTVQKTLYD 117

Query: 396 KSKITEDT 419
           K+ +T  T
Sbjct: 118 KNPLTRST 125


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/68 (25%), Positives = 30/68 (44%)
 Frame = +3

Query: 237 HDVNTNVAKDVILFKYENPSFYKYMNIFAVVQYAFWMYLGIFSFSTLKDAPVDKSKITED 416
           H V  N +  V L ++ +   +  +N++ +  Y    Y    +F T+K  PV  +    D
Sbjct: 64  HLVKGNFSTIVSLPRFVDLDEWVALNVYELFTYLNHFYDVFATFCTVKTCPVMSAAANFD 123

Query: 417 TPWL*KNK 440
             WL  N+
Sbjct: 124 YTWLDNNR 131


>SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +3

Query: 777 GNGGKVREDHVIYRIXXEYGIISA 848
           GNGGKVR   + Y I    G ISA
Sbjct: 10  GNGGKVRSTSIEYPIFVHSGSISA 33


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +2

Query: 668 KVQLPLKVRNRMMHYMLDMRGEFKNPLL 751
           ++  P +  N+M+ YM++ +G+F + +L
Sbjct: 357 QILFPGRTNNQMLRYMMECKGKFSHKML 384


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -3

Query: 447 SQIYFSITMECLLLSSICLRVHLLRLKMRIYLNTSKMHIELQRICSYTYKK 295
           +QIY  +  E   L S C+ V+L      I+L+     +E   IC  T ++
Sbjct: 434 AQIYEELDFEKQRLFSACIEVYLSYCNTLIFLHRLNESVEGANICLDTARR 484


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = -3

Query: 654 LS*QQISSMGTFMDRLRPNGA*VTNETCLPPLWRTKYLTERRVYIHIIVKDPAPIITAQ 478
           LS  Q   +   + +  P    V  +  L  + +TK  TE     H+I   P P IT +
Sbjct: 735 LSADQCKQLANVLTQASPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSPTPQITVK 793


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,455,506
Number of Sequences: 5004
Number of extensions: 72700
Number of successful extensions: 183
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)