Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_H18
         (887 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0419 - 28814754-28816114,28816749-28817435,28817554-288177...    31   1.6  
07_03_1048 - 23545060-23546381,23546479-23546554                       28   8.6  
01_01_0875 + 6856440-6857195,6858670-6858918,6859025-6859147,685...    28   8.6  

>02_05_0419 -
           28814754-28816114,28816749-28817435,28817554-28817774,
           28818536-28818750
          Length = 827

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 22/75 (29%), Positives = 34/75 (45%)
 Frame = +1

Query: 463 NTLGTLGCDYWGRILNNDMDVHPSFREIFSSPQRRQACFIGHLRSIWSQSIHESSH*RYL 642
           N  G L CD  G +   D ++ P FR+ +S+   R+     H   +  +SI         
Sbjct: 674 NPSGALDCDDEGTLAYPDWEMKPDFRK-YSNSDFRKYSNSNHQVKVDKKSISNVRRPSAS 732

Query: 643 LSGKKDSGKSTATSQ 687
            S KK S K++ +SQ
Sbjct: 733 KSQKKQSKKASLSSQ 747


>07_03_1048 - 23545060-23546381,23546479-23546554
          Length = 465

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = -3

Query: 582 NETCLPPLWRTKYLTERRVYIHIIVKDPAPI 490
           ++T   P WRT++  ER +++ ++ +   P+
Sbjct: 229 DDTVATPAWRTRWREERALWLELLARPTEPV 259


>01_01_0875 +
           6856440-6857195,6858670-6858918,6859025-6859147,
           6859288-6859479
          Length = 439

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 461 KILLAPWAVIIGAG--SLTMIWMYTLRSVRYLVLHKGGKHVSLVTYAPFGR 607
           K++  P AVI+GAG   + +  +  LR V Y+VL + G   SL  +  + R
Sbjct: 38  KVVDVPGAVIVGAGPAGVAVGALLGLRGVAYVVLERCGCIASLWRHRTYDR 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,817,096
Number of Sequences: 37544
Number of extensions: 411336
Number of successful extensions: 851
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)