Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_H16
         (898 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.6  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 20/48 (41%), Positives = 22/48 (45%)
 Frame = -3

Query: 170 KVD*KNEIT*KVNKNSKHVLRTTGKQRSLXLKPTSKINQLQKILRNSL 27
           KV    +I   V K S   L TTG    L    TS  +QLQ I R SL
Sbjct: 698 KVKKDKDIILNVPKESTQSLTTTGNVSYLTTNNTSNNSQLQ-IPRASL 744


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +3

Query: 210 APEEVTSTEPKESPVKKSPAKKVEAAESNGKENG 311
           +P    ++ P  S     PAK   AA    K NG
Sbjct: 512 SPNPRIASAPSSSTSSSPPAKGAAAAGQPSKRNG 545


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/35 (22%), Positives = 17/35 (48%)
 Frame = +3

Query: 285 AESNGKENGTDEAPEDSPAENGDAEESNDASENGD 389
           A +N   N  +    +   +NG+   +++ + NGD
Sbjct: 237 ASNNNNNNNNNNNNNNGANDNGNGNGASNNNNNGD 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,658
Number of Sequences: 438
Number of extensions: 3638
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)