Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_H15
         (952 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.1  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -1

Query: 451 PXPPPPXPAXXPXXFVRKXPPXPPP 377
           P PPPP P   P       PP PPP
Sbjct: 9   PPPPPPPPGFEPP----SQPPPPPP 29



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -1

Query: 451 PXPPPPXPAXXPXXFVRKXPPXPPPXP 371
           P  PPP P   P  F     P PPP P
Sbjct: 6   PGNPPPPP--PPPGFEPPSQPPPPPPP 30


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +1

Query: 847  PXXXSPXXPPXXGXXPLPXQAXPXPXXGXXSPNPP 951
            P   +P  PP     P P  A P P     +P PP
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -1

Query: 445 PPPPXPAXXPXXFVRKXPPXPPPXP 371
           PPPP P   P       PP PPP P
Sbjct: 761 PPPPPPP--PGVAGAGPPPPPPPPP 783



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
 Frame = -1

Query: 451 PXPPP-PXPAXXPXXFVRKXPPXPPP 377
           P P P P P   P   +   PP PPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPP 767


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,380,323
Number of Sequences: 5004
Number of extensions: 12274
Number of successful extensions: 51
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)