Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_H11
         (882 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D88213-1|BAA19001.1|  729|Homo sapiens retina-specific amine oxi...    35   0.45 
DQ060035-1|AAY43129.1|  756|Homo sapiens amine oxidase, copper c...    35   0.45 
BC142641-1|AAI42642.1|  756|Homo sapiens amine oxidase, copper c...    35   0.45 
AF081363-1|AAD39345.1|  756|Homo sapiens retina copper-containin...    35   0.45 
AB012943-2|BAA32590.1|  756|Homo sapiens retina-specific amine o...    35   0.45 
AB012943-1|BAA32589.1|  729|Homo sapiens retina-specific amine o...    35   0.45 
AK127255-1|BAC86902.1| 1007|Homo sapiens protein ( Homo sapiens ...    33   1.4  
AC002398-4|AAB81198.1|  903|Homo sapiens F25965_3 protein.             33   1.4  

>D88213-1|BAA19001.1|  729|Homo sapiens retina-specific amine
           oxidase protein.
          Length = 729

 Score = 34.7 bits (76), Expect = 0.45
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 493 LHQLGVEFFLGLDSWS-AHWNMHQVAILGHYHLELKEYHLEWFS 365
           LH +G+E  L   +   AHW + QV  LGHY+ +L +   E+ S
Sbjct: 234 LHPVGLELLLDHRALDPAHWTVQQVFYLGHYYADLGQLEREFKS 277


>DQ060035-1|AAY43129.1|  756|Homo sapiens amine oxidase, copper
           containing 2 (retina-specific) protein.
          Length = 756

 Score = 34.7 bits (76), Expect = 0.45
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 493 LHQLGVEFFLGLDSWS-AHWNMHQVAILGHYHLELKEYHLEWFS 365
           LH +G+E  L   +   AHW + QV  LGHY+ +L +   E+ S
Sbjct: 234 LHPVGLELLLDHRALDPAHWTVQQVFYLGHYYADLGQLEREFKS 277


>BC142641-1|AAI42642.1|  756|Homo sapiens amine oxidase, copper
           containing 2 (retina-specific) protein.
          Length = 756

 Score = 34.7 bits (76), Expect = 0.45
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 493 LHQLGVEFFLGLDSWS-AHWNMHQVAILGHYHLELKEYHLEWFS 365
           LH +G+E  L   +   AHW + QV  LGHY+ +L +   E+ S
Sbjct: 234 LHPVGLELLLDHRALDPAHWTVQQVFYLGHYYADLGQLEREFKS 277


>AF081363-1|AAD39345.1|  756|Homo sapiens retina copper-containing
           monoamine oxidase protein.
          Length = 756

 Score = 34.7 bits (76), Expect = 0.45
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 493 LHQLGVEFFLGLDSWS-AHWNMHQVAILGHYHLELKEYHLEWFS 365
           LH +G+E  L   +   AHW + QV  LGHY+ +L +   E+ S
Sbjct: 234 LHPVGLELLLDHRALDPAHWTVQQVFYLGHYYADLGQLEREFKS 277


>AB012943-2|BAA32590.1|  756|Homo sapiens retina-specific amine
           oxidase protein.
          Length = 756

 Score = 34.7 bits (76), Expect = 0.45
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 493 LHQLGVEFFLGLDSWS-AHWNMHQVAILGHYHLELKEYHLEWFS 365
           LH +G+E  L   +   AHW + QV  LGHY+ +L +   E+ S
Sbjct: 234 LHPVGLELLLDHRALDPAHWTVQQVFYLGHYYADLGQLEREFKS 277


>AB012943-1|BAA32589.1|  729|Homo sapiens retina-specific amine
           oxidase protein.
          Length = 729

 Score = 34.7 bits (76), Expect = 0.45
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 493 LHQLGVEFFLGLDSWS-AHWNMHQVAILGHYHLELKEYHLEWFS 365
           LH +G+E  L   +   AHW + QV  LGHY+ +L +   E+ S
Sbjct: 234 LHPVGLELLLDHRALDPAHWTVQQVFYLGHYYADLGQLEREFKS 277


>AK127255-1|BAC86902.1| 1007|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45322 fis, clone BRHIP3006294, moderately
           similar to Mus musculus Cdc42 GTPase-activating protein
           (Cdgap). ).
          Length = 1007

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 75  LHIADRMSQIAEEQKLEESDGLPPASSS 158
           L +A+R  Q+AE+Q  +E  G PPAS S
Sbjct: 766 LALAERAQQVAEQQSQQECGGTPPASQS 793


>AC002398-4|AAB81198.1|  903|Homo sapiens F25965_3 protein.
          Length = 903

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 75  LHIADRMSQIAEEQKLEESDGLPPASSS 158
           L +A+R  Q+AE+Q  +E  G PPAS S
Sbjct: 518 LALAERAQQVAEQQSQQECGGTPPASQS 545


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,144,781
Number of Sequences: 237096
Number of extensions: 1645871
Number of successful extensions: 7256
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7250
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)