Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_H10
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces...    26   6.4  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    26   8.5  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    26   8.5  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    26   8.5  
SPBC3B8.08 |||Sjogren's syndrome/scleroderma autoantigen 1 famil...    26   8.5  

>SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 570 FIRRYALPQGCLPDTVESKLSSDGVLTVTAPKV 668
           F R   +P     D +E+  S+ G+LTVT PKV
Sbjct: 100 FSRTITIPAKIDADRIEANFSN-GLLTVTLPKV 131


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
 Frame = +2

Query: 131 KRCQFCHTCTIWRDHFV*WIENS---SARRISTGCRLSTNRCIVTATECL--RFNQFRDV 295
           K C+ C+ C    DH   WI N    +  R      L T + +  +   L   FN  RD+
Sbjct: 172 KHCRLCNICVEKFDHHCIWINNCVGLNNARYFFLFLLCTIQLLFHSILRLGYHFNALRDM 231

Query: 296 VE-PQFYRPW 322
            + P F R W
Sbjct: 232 RQYPSFLRSW 241


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 673 ASTLGAVTVRTPSEDNFDSTVSGKQPCGSAYRLMN 569
           A+ +GA+ +   S +N  S + GK+ C S  R+M+
Sbjct: 700 ATPIGAIRIHLRSANNLHSKIPGKK-CDSYARIMS 733


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 251 VTATECLRFNQFRDVVEPQFYRPWENTLRQIENVMKPIEQLASAMNQM 394
           V A E L   QF+ V+E +    +E+ + Q  N    +E LAS ++ +
Sbjct: 669 VQADELLNIRQFQRVIEEKQDLNFESDIIQATNDGMVVEDLASKLDHI 716


>SPBC3B8.08 |||Sjogren's syndrome/scleroderma autoantigen 1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 153

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +3

Query: 600 CLPDTVESKLSSDGVLTVTAPKVLALP---STGEKIVPITHTGPVMKKVGSQEPSAVTV 767
           C+ D  ES  S    +  +APK+ +LP   +   +    T   PVM++  S   + ++V
Sbjct: 47  CINDLKESDASEHVTVAESAPKIASLPISKTNDAERSQQTTKAPVMERTESSHQATLSV 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,966,846
Number of Sequences: 5004
Number of extensions: 55910
Number of successful extensions: 168
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)