Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_H10
(908 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0485 - 8808139-8808618 36 0.059
03_02_0484 + 8805053-8805538 36 0.059
03_02_0483 - 8804021-8804485 36 0.059
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 36 0.059
01_01_0229 - 1943473-1943922 36 0.059
03_02_0478 + 8775892-8776377 35 0.078
01_01_0231 + 1951047-1951499 35 0.10
11_02_0041 - 7669692-7670312 34 0.18
01_01_0227 + 1933247-1933699 34 0.18
04_04_1423 - 33455818-33457076,33457165-33457201 29 3.9
02_05_0494 + 29486960-29487454 29 3.9
04_04_0939 - 29530242-29531087,29531406-29531597,29531690-295317... 29 5.1
01_01_0599 - 4448290-4448790 29 5.1
01_01_0228 + 1940149-1940649 29 5.1
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508... 29 6.7
04_04_0947 - 29583775-29583931,29584030-29584256 28 8.9
>03_02_0485 - 8808139-8808618
Length = 159
Score = 35.5 bits (78), Expect = 0.059
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +3
Query: 561 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 665
S +F+RR+ LP+ P+ +++ + +GVLTVT PK
Sbjct: 111 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPK 144
>03_02_0484 + 8805053-8805538
Length = 161
Score = 35.5 bits (78), Expect = 0.059
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +3
Query: 561 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 665
S +F+RR+ LP+ P+ +++ + +GVLTVT PK
Sbjct: 113 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPK 146
>03_02_0483 - 8804021-8804485
Length = 154
Score = 35.5 bits (78), Expect = 0.059
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +3
Query: 561 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 665
S +F+RR+ LP+ P+ +++ + +GVLTVT PK
Sbjct: 106 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPK 139
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 35.5 bits (78), Expect = 0.059
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +3
Query: 561 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 665
S QF+RR+ LP+ D V++ L +GVLTVT PK
Sbjct: 102 SGQFMRRFRLPENAKVDQVKAGL-ENGVLTVTVPK 135
>01_01_0229 - 1943473-1943922
Length = 149
Score = 35.5 bits (78), Expect = 0.059
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +3
Query: 561 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 665
S QF+RR+ LP+ D V++ + +GVLTVT PK
Sbjct: 101 SGQFMRRFRLPENAKVDQVKASM-ENGVLTVTVPK 134
>03_02_0478 + 8775892-8776377
Length = 161
Score = 35.1 bits (77), Expect = 0.078
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +3
Query: 561 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 665
S +F+RR+ LP P+ +++ + + GVLTVT PK
Sbjct: 113 SGKFLRRFRLPDNAKPEQIKASMEN-GVLTVTVPK 146
>01_01_0231 + 1951047-1951499
Length = 150
Score = 34.7 bits (76), Expect = 0.10
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +3
Query: 561 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 665
S QF+RR+ LP+ D V++ + +GVLTVT PK
Sbjct: 102 SGQFMRRFRLPENAKVDQVKAGM-ENGVLTVTVPK 135
>11_02_0041 - 7669692-7670312
Length = 206
Score = 33.9 bits (74), Expect = 0.18
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +3
Query: 567 QFIRRYALPQGCLPDTVESKLSSDGVLTVTAPKVLALPSTGEKIVPITHTG 719
+F RR+ +P G V ++L DGVLTVT PKV ++V I G
Sbjct: 141 RFWRRFRMPPGADVGRVAARLD-DGVLTVTVPKVPGHRGREPRVVAIDGAG 190
>01_01_0227 + 1933247-1933699
Length = 150
Score = 33.9 bits (74), Expect = 0.18
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +3
Query: 561 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 665
S +F RR+ LP+G D V + + +GVLTVT PK
Sbjct: 102 SGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPK 135
>04_04_1423 - 33455818-33457076,33457165-33457201
Length = 431
Score = 29.5 bits (63), Expect = 3.9
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = -1
Query: 491 HIYFIR*KMLYVDIDLKLLVVGCDFRAHLXEAPFDSSPKPAARSVSLRFL 342
HI +R D D+K LV + L FDSSP PAA + L
Sbjct: 156 HINLVRLYGFCFDADVKALVYEYMEKGSLDRYLFDSSPSPAAERIGFEKL 205
>02_05_0494 + 29486960-29487454
Length = 164
Score = 29.5 bits (63), Expect = 3.9
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 564 RQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 665
R + ++ LP+ D ++++ DGVLTVT PK
Sbjct: 106 RAAVTQFRLPEDAAADEASARMA-DGVLTVTVPK 138
>04_04_0939 -
29530242-29531087,29531406-29531597,29531690-29531770,
29532300-29532428,29532579-29532650,29532761-29532829,
29533809-29533891,29534101-29534203,29534289-29534402,
29536230-29536274
Length = 577
Score = 29.1 bits (62), Expect = 5.1
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +2
Query: 119 RTNKKRCQFCHTCTIWRDHFV*WIENSSARR 211
R N K C+ C C DH W+ N R+
Sbjct: 117 RKNSKHCRSCDKCVDGFDHHCRWLNNCVGRK 147
>01_01_0599 - 4448290-4448790
Length = 166
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 567 QFIRRYALPQGCLPDTVESKLSSDGVLTVTAPKV 668
+F+R++ LP D + S + DGVLTVT K+
Sbjct: 118 KFMRKFVLPDNADVDKI-SAVCQDGVLTVTVEKL 150
>01_01_0228 + 1940149-1940649
Length = 166
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 570 FIRRYALPQGCLPDTVESKLSSDGVLTVTAPKVL 671
F R+ LP + D V + + G+LTVT PKV+
Sbjct: 104 FFGRFHLPDDAVVDLVRASMDG-GMLTVTVPKVV 136
>03_05_0176 +
21546952-21547887,21548856-21548921,21549959-21550877,
21551277-21551449,21551927-21552475
Length = 880
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 249 MHRLVERRHPVEILRAEEFSIHQTKWSL-QIVHVWQN*HR 133
+H+ +RH +E L ++ S HQ + Q H WQ HR
Sbjct: 737 LHKYANKRHSLEELPSDTSSPHQKHHQMSQEKHHWQQKHR 776
>04_04_0947 - 29583775-29583931,29584030-29584256
Length = 127
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -2
Query: 277 EXETFCSGHDASIG*KATSCRNPAGRRVLDPSDE 176
+ E SGH AS A S R P GR DP D+
Sbjct: 12 DIEAGFSGHSASPVKPAASPRRPGGRLFCDPCDD 45
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,074,176
Number of Sequences: 37544
Number of extensions: 357617
Number of successful extensions: 876
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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