Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_H09
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.06c |uvi31||BolA domain UV inducedv protein Uvi31|Schiz...    60   6e-10
SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr ...    38   0.002
SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces ...    38   0.003
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    30   0.51 
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    27   4.8  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    26   8.3  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   8.3  

>SPBC16E9.06c |uvi31||BolA domain UV inducedv protein
           Uvi31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 102

 Score = 59.7 bits (138), Expect = 6e-10
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 8/89 (8%)
 Frame = +3

Query: 228 ESTIRNKLLTILESKHVQVINESYMHN-------VPKGAETHFKVVVVSEKFDGLPLIKR 386
           +  I   L   L++  + + N+SY H+       VP   ETHF++ +VS +F G+  + R
Sbjct: 12  QDRIYKTLSEALKTDKITLYNDSYKHSHHIAMKGVPDTNETHFRLEIVSPEFSGMSRVAR 71

Query: 387 HRLVNELLAEELQNGVHALSIV-AKTPKQ 470
           HRLV  LL +E   G+HAL I  +KTP +
Sbjct: 72  HRLVYGLLKDEFDGGLHALQITSSKTPDE 100


>SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 80

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 21/64 (32%), Positives = 37/64 (57%)
 Frame = +3

Query: 261 LESKHVQVINESYMHNVPKGAETHFKVVVVSEKFDGLPLIKRHRLVNELLAEELQNGVHA 440
           LE  H+++       ++  G   +F+V++VS  F+G   + RHRLVN  L E +++ +HA
Sbjct: 15  LEPTHIEI------QDMSGGCGQNFEVIIVSPLFEGKSTLARHRLVNHKLQEVIKD-IHA 67

Query: 441 LSIV 452
            + V
Sbjct: 68  FTQV 71


>SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 116

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 17/48 (35%), Positives = 31/48 (64%)
 Frame = +3

Query: 306 NVPKGAETHFKVVVVSEKFDGLPLIKRHRLVNELLAEELQNGVHALSI 449
           +V  G  + ++V + S+ F G   + +HRLVN +L EE++N +H L++
Sbjct: 53  DVSGGCGSMYQVAIKSKAFQGKNTLAQHRLVNSILKEEIRN-MHGLNL 99


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 21/57 (36%), Positives = 33/57 (57%)
 Frame = +3

Query: 231 STIRNKLLTILESKHVQVINESYMHNVPKGAETHFKVVVVSEKFDGLPLIKRHRLVN 401
           +T+   L   L ++  Q I+ S MHN  K  +T + V+ VSE  DG  LI++HR ++
Sbjct: 436 NTVTEDLWAALSAESGQDIS-STMHNWTK--KTGYPVLSVSETNDGELLIEQHRFLS 489


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 553 VWNHLLEVDSARSCVLDVFLIVMEMRSF-WGLNS 651
           +W H  ++DS  +C   V+L + +  S+ WG +S
Sbjct: 735 IWTHCTDMDSMDNC---VYLCIQKFESYGWGASS 765


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 642 PPKRSHFHDYQKNIQYTRSRGINLKQ 565
           PP+ SH +D+Q N QY     I+ K+
Sbjct: 631 PPRESHVYDFQ-NFQYEEDDCIDYKR 655


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -2

Query: 379 IRGK-PSNFSETTTTLKCVSAPFG 311
           +RGK P N S +    KC S PFG
Sbjct: 737 LRGKIPENVSSSELIKKCASNPFG 760


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,017,963
Number of Sequences: 5004
Number of extensions: 56554
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)