Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_H09
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0188 + 6251256-6251561                                           78   1e-14
09_02_0168 - 5253588-5254688                                           70   3e-12
01_06_1460 - 37519393-37519591,37519724-37519746,37519843-37519905     45   9e-05
08_02_1524 + 27657711-27657768,27658612-27658671,27658805-276588...    29   3.8  
03_01_0458 - 3521938-3522024,3522133-3522213,3522673-3522806,352...    28   8.7  

>03_02_0188 + 6251256-6251561
          Length = 101

 Score = 77.8 bits (183), Expect = 1e-14
 Identities = 40/83 (48%), Positives = 57/83 (68%), Gaps = 5/83 (6%)
 Frame = +3

Query: 237 IRNKLLTILESKHVQVINESYMHN----VPKGA-ETHFKVVVVSEKFDGLPLIKRHRLVN 401
           +R KL + LE+  + + + SY H     V   A ETHF + V+S KF+G  L+KRHR+V 
Sbjct: 16  MRQKLQSALEASALDIEDVSYQHAGHAAVKDNANETHFNIRVISPKFEGQSLVKRHRMVY 75

Query: 402 ELLAEELQNGVHALSIVAKTPKQ 470
           +LL +EL +G+HA+SIVAKTPK+
Sbjct: 76  DLLTDELNSGLHAISIVAKTPKE 98


>09_02_0168 - 5253588-5254688
          Length = 366

 Score = 69.7 bits (163), Expect = 3e-12
 Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 5/86 (5%)
 Frame = +3

Query: 228 ESTIRNKLLTILESKHVQVINESYMHNVPKGA-----ETHFKVVVVSEKFDGLPLIKRHR 392
           +  I+  L   L    +Q+ + S++H    G      ETHF V VVSE F G  L+KRHR
Sbjct: 280 QERIKESLERGLSPVQLQIEDISHLHKGHAGVSGSNGETHFNVRVVSEAFQGKSLLKRHR 339

Query: 393 LVNELLAEELQNGVHALSIVAKTPKQ 470
            V +LL +EL+NG+HALSI AKTP +
Sbjct: 340 AVYDLLQDELKNGLHALSIDAKTPSE 365


>01_06_1460 - 37519393-37519591,37519724-37519746,37519843-37519905
          Length = 94

 Score = 44.8 bits (101), Expect = 9e-05
 Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
 Frame = +3

Query: 318 GAETHFKVVVVSEKFDGLPLIKRHRLVNELLAEELQNGVHALSI-VAKTPKQ 470
           G    +++ VVSEKF+G  L++RHR+VN  LA  +   +HA+SI  A TP Q
Sbjct: 29  GCGASYEIEVVSEKFEGKRLLERHRMVNTALAPHMAE-IHAVSIKKALTPAQ 79


>08_02_1524 +
           27657711-27657768,27658612-27658671,27658805-27658890,
           27659343-27659963,27660460-27660618
          Length = 327

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
 Frame = +3

Query: 204 MSSASGIVESTIRNKLLTILESKHVQVINESYMHNVPKGAETHFK--VVVVSEKFDGLPL 377
           MS     +++ I++  +++ +  +      SY+  V K A+ HFK  V V S+K D   +
Sbjct: 166 MSEVFTELKAIIQDLQVSLRKGDNAVAKIHSYIRLVKK-AKKHFKKTVKVASDKED-CKI 223

Query: 378 IKRHRLVNELLAEELQNGVHALSIVAKTPK 467
           +KR     E+    L++ +H LS   + PK
Sbjct: 224 VKRLSKAREITTSLLESTMHLLSKQIQMPK 253


>03_01_0458 -
           3521938-3522024,3522133-3522213,3522673-3522806,
           3523189-3523270,3523420-3523692,3523953-3524162,
           3524252-3524337,3525197-3525289,3526003-3526227,
           3526320-3526930,3529328-3529395,3529491-3529679,
           3529773-3529901,3530013-3532484
          Length = 1579

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 484 INWLRTVPTVEEDLVNKLHSRAKVWNHLLEVDS 582
           ++WL T P+VEE L++        WNH+L+V S
Sbjct: 649 LSWLYTGPSVEEQLLD--------WNHMLDVRS 673


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,835,104
Number of Sequences: 37544
Number of extensions: 305738
Number of successful extensions: 653
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)