Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_H09
         (893 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    24   1.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   1.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   1.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   1.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   3.8  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   6.6  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   8.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.7  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 510 CRGGFGK*TTLASKSLESLA*G*FRAILC 596
           C GG G+ +++ S SL SLA      ILC
Sbjct: 9   CAGGGGRLSSVLSLSLTSLASSLIFTILC 37


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 510 CRGGFGK*TTLASKSLESLA*G*FRAILC 596
           C GG G+ +++ S SL SLA      ILC
Sbjct: 9   CAGGGGRLSSVLSLSLTSLASSLIFTILC 37


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 510 CRGGFGK*TTLASKSLESLA*G*FRAILC 596
           C GG G+ +++ S SL SLA      ILC
Sbjct: 9   CAGGGGRLSSVLSLSLTSLASSLIFTILC 37


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 510 CRGGFGK*TTLASKSLESLA*G*FRAILC 596
           C GG G+ +++ S SL SLA      ILC
Sbjct: 9   CAGGGGRLSSVLSLSLTSLASSLIFTILC 37


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 514 EEDLVNKLHSRAKVWNHL 567
           EEDL+NKL +  +  NHL
Sbjct: 73  EEDLMNKLPTTPEYNNHL 90


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 125 TYVCTYVFYKLFLLLQMFLKCFW 57
           TY  + V Y L+ L Q+F+ C +
Sbjct: 154 TYAASVVGYLLYSLGQVFMLCIF 176


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 216 SGIVESTIRNKLLTILESKHVQVIN 290
           SG V +T RN+ L  L  ++  V+N
Sbjct: 364 SGRVNNTQRNEYLLALSDRNQNVLN 388


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +3

Query: 168 MLRFFQHRTIRNMSSASGIVESTIRNKLLTILESKHVQVINESYMHNVPK 317
           ++R  Q++   N  S+  ++  T+R K  T     H     +S  H  PK
Sbjct: 358 VMRRPQYKFETNRYSSGRVLMRTVRGKEKTCYYPYHPSTQEDSEEHLTPK 407


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +3

Query: 168 MLRFFQHRTIRNMSSASGIVESTIRNKLLTILESKHVQVINESYMHNVPK 317
           ++R  Q++   N  S+  ++  T+R K  T     H     +S  H  PK
Sbjct: 358 VMRRPQYKFETNRYSSGRVLMRTVRGKEKTCYYPYHPSTQEDSEEHLTPK 407


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,623
Number of Sequences: 438
Number of extensions: 3910
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)