Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_H08
         (866 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50191-1|AAO38600.2|  372|Caenorhabditis elegans Dumpy : shorter...    28   9.9  

>U50191-1|AAO38600.2|  372|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 10, isoform b protein.
          Length = 372

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 4/90 (4%)
 Frame = -2

Query: 331 SYC*LSLTFIYVNSSFTT*SRVQNKVP---HYGYARLXGRESLRRVT-SVARPVQRPSDV 164
           +YC +   + Y    F+T  R  ++      YG  R+ G  + R    S A    RP+  
Sbjct: 65  AYCEVRFLYFYCIKFFSTLQRSNDEAALELQYGKMRMTGNRTARGAYGSGASHGFRPTAY 124

Query: 163 AGRRRPSHRAHATPATCWGGRVAPRGNTGT 74
                 +      P  C  G   PRG++GT
Sbjct: 125 GDEITGAPLETECPGCCIPGPPGPRGSSGT 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,924,838
Number of Sequences: 27780
Number of extensions: 258093
Number of successful extensions: 461
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)