Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_H07
         (933 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.18 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.18 
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    30   0.41 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -2

Query: 512 PKXXPPRPPXGXXFXKTXXPPPPPP 438
           P   PP PP    F     PPPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -2

Query: 512 PKXXPPRPPXGXXFXKTXXPPPPPP 438
           P   PP PP       +  PPPPPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = -1

Query: 501 PPPXPXGXPXX*NEXTPPPPPXLXXXKXSXP 409
           PPP P G         PPPP  +   K   P
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 20/66 (30%), Positives = 20/66 (30%)
 Frame = -2

Query: 599 PPXSXXXVGXPXXPXXXXRXXXPGXXXXGPKXXPPRPPXGXXFXKTXXPPPPPPXXXXXN 420
           PP     V  P           P     GP   PP PP G        PPPPPP      
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPP--PPPPPPGVAGAGPPPPPPPPPAVSAGG 789

Query: 419 XPXLAP 402
               AP
Sbjct: 790 SRYYAP 795


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -3

Query: 499 PPXPXXAPXFXKRXXPPPPPXSXXXKTFPPLPL 401
           PP P   P   K   PPPP  S    + PP PL
Sbjct: 731 PPTPAPTPAV-KHHPPPPPVRSSISPSMPPAPL 762


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/56 (26%), Positives = 16/56 (28%)
 Frame = -1

Query: 570  PXXPLXXXPXXFXGXXXXGPKKXPPPXPXGXPXX*NEXTPPPPPXLXXXKXSXPCP 403
            P  P    P          P    PP P   P      + PPPP       S P P
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 494 RPPXGXXFXKTXXPPPPPP 438
           +PP G     +  PPPPPP
Sbjct: 324 KPPIGNGSSNSSLPPPPPP 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,653,854
Number of Sequences: 5004
Number of extensions: 20043
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)