Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_H06
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...    28   1.6  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    28   1.6  
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...    28   1.6  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    28   2.1  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    27   4.8  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    26   8.4  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    26   8.4  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 577 IRRGSHHHRAEEGTRRRQGREKGAHRTDRSRSQGDQGPER 696
           I R S H R+  G +R Q R+K      R  S    GP+R
Sbjct: 3   ITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKR 42


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -2

Query: 204 TRGQSPNTNGRRDIVRLYLNRNGKTQRK 121
           TR ++P+++    IVRLY ++NG  +RK
Sbjct: 836 TREETPSSDKVLRIVRLYRDKNGNLERK 863


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 577 IRRGSHHHRAEEGTRRRQGREKGAHRTDRSRSQGDQGPER 696
           I R S H R+  G +R Q R+K      R  S    GP+R
Sbjct: 3   ITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKR 42


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 663 PVCAMGTFLSPLTASGTFLGAVMVRTP-SDDSRDSTVSGAAP 541
           P  +   FL+P+T SGTF  +     P S   R +T S A P
Sbjct: 384 PATSASPFLTPVTTSGTFNYSFNATNPQSILQRPATTSSAVP 425


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = +3

Query: 513 SSSDVTRCLKARRLRLWNRGCHQTGFSPSPRRGRYPT 623
           SS   TR  +  R     RGC  T   P PR G   T
Sbjct: 319 SSKGPTRLYEVARFNCTTRGCEYTQNIPCPRAGHSHT 355


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 542 GAAPETVESRLSSDGVLTITAPRKVPD 622
           G  P T+ES ++ D  L I   RK+ D
Sbjct: 452 GTDPSTLESDIAEDAALQIDEVRKISD 478


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -2

Query: 645 TFLSPLTASGTFLGAVMVRTPSDDS-RDSTVSGAAP 541
           +F+S +TA  T  GAV+V  P+  +  ++ VSG+ P
Sbjct: 783 SFMSTITAHDTSSGAVIVVEPTAGTVTETIVSGSIP 818


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,185,586
Number of Sequences: 5004
Number of extensions: 62835
Number of successful extensions: 173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)