Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_H05
(873 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X74331-1|CAA52378.1| 509|Homo sapiens DNA primase (p58 subunit)... 90 8e-18
BC064931-1|AAH64931.1| 509|Homo sapiens primase, DNA, polypepti... 90 8e-18
AL162579-2|CAI40673.1| 340|Homo sapiens primase, polypeptide 2A... 90 8e-18
AL121975-2|CAI42767.1| 340|Homo sapiens primase, polypeptide 2A... 90 8e-18
AL121958-1|CAC03545.2| 340|Homo sapiens primase, polypeptide 2A... 90 8e-18
BC017833-1|AAH17833.1| 158|Homo sapiens PRIM2A protein protein. 79 2e-14
AL162579-1|CAH73686.1| 158|Homo sapiens primase, polypeptide 2A... 79 2e-14
AL121975-1|CAI20534.1| 158|Homo sapiens primase, polypeptide 2A... 79 2e-14
>X74331-1|CAA52378.1| 509|Homo sapiens DNA primase (p58 subunit)
protein.
Length = 509
Score = 90.2 bits (214), Expect = 8e-18
Identities = 37/80 (46%), Positives = 60/80 (75%)
Frame = +3
Query: 492 DFEARRKDHIAHFILRLAYCRTEELRRWFIARELELFKMRFAVMRGEAVEVFFKLNNLCY 671
++E RR+DHI+HFILRLAYC++EELRRWFI +E++L + RF+++ + ++ F K + L +
Sbjct: 92 EYEPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQF 151
Query: 672 TTISEDEKNEVIQNLIESTP 731
IS++EK Q ++ S+P
Sbjct: 152 EAISDEEKTLREQEIVASSP 171
Score = 46.0 bits (104), Expect = 2e-04
Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +2
Query: 203 RKSTKTPATGNQFEL-YPHDLQLYKIPPVENITLQEFETLALERV 334
RK K G+Q YPH LQ Y PP ENI+L EFE LA++RV
Sbjct: 6 RKRRKLRLAGDQRNASYPHCLQFYLQPPSENISLTEFENLAIDRV 50
>BC064931-1|AAH64931.1| 509|Homo sapiens primase, DNA, polypeptide
2 (58kDa) protein.
Length = 509
Score = 90.2 bits (214), Expect = 8e-18
Identities = 37/80 (46%), Positives = 60/80 (75%)
Frame = +3
Query: 492 DFEARRKDHIAHFILRLAYCRTEELRRWFIARELELFKMRFAVMRGEAVEVFFKLNNLCY 671
++E RR+DHI+HFILRLAYC++EELRRWFI +E++L + RF+++ + ++ F K + L +
Sbjct: 92 EYEPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQF 151
Query: 672 TTISEDEKNEVIQNLIESTP 731
IS++EK Q ++ S+P
Sbjct: 152 EAISDEEKTLREQEIVASSP 171
Score = 44.4 bits (100), Expect = 5e-04
Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +2
Query: 203 RKSTKTPATGNQFEL-YPHDLQLYKIPPVENITLQEFETLALERV 334
RK K G+Q YPH LQ Y PP ENI+L EFE LA++RV
Sbjct: 6 RKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRV 50
>AL162579-2|CAI40673.1| 340|Homo sapiens primase, polypeptide 2A,
58kDa protein.
Length = 340
Score = 90.2 bits (214), Expect = 8e-18
Identities = 37/80 (46%), Positives = 60/80 (75%)
Frame = +3
Query: 492 DFEARRKDHIAHFILRLAYCRTEELRRWFIARELELFKMRFAVMRGEAVEVFFKLNNLCY 671
++E RR+DHI+HFILRLAYC++EELRRWFI +E++L + RF+++ + ++ F K + L +
Sbjct: 92 EYEPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQF 151
Query: 672 TTISEDEKNEVIQNLIESTP 731
IS++EK Q ++ S+P
Sbjct: 152 EAISDEEKTLREQEIVASSP 171
Score = 44.4 bits (100), Expect = 5e-04
Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +2
Query: 203 RKSTKTPATGNQFEL-YPHDLQLYKIPPVENITLQEFETLALERV 334
RK K G+Q YPH LQ Y PP ENI+L EFE LA++RV
Sbjct: 6 RKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRV 50
>AL121975-2|CAI42767.1| 340|Homo sapiens primase, polypeptide 2A,
58kDa protein.
Length = 340
Score = 90.2 bits (214), Expect = 8e-18
Identities = 37/80 (46%), Positives = 60/80 (75%)
Frame = +3
Query: 492 DFEARRKDHIAHFILRLAYCRTEELRRWFIARELELFKMRFAVMRGEAVEVFFKLNNLCY 671
++E RR+DHI+HFILRLAYC++EELRRWFI +E++L + RF+++ + ++ F K + L +
Sbjct: 92 EYEPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQF 151
Query: 672 TTISEDEKNEVIQNLIESTP 731
IS++EK Q ++ S+P
Sbjct: 152 EAISDEEKTLREQEIVASSP 171
Score = 44.4 bits (100), Expect = 5e-04
Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +2
Query: 203 RKSTKTPATGNQFEL-YPHDLQLYKIPPVENITLQEFETLALERV 334
RK K G+Q YPH LQ Y PP ENI+L EFE LA++RV
Sbjct: 6 RKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRV 50
>AL121958-1|CAC03545.2| 340|Homo sapiens primase, polypeptide 2A,
58kDa protein.
Length = 340
Score = 90.2 bits (214), Expect = 8e-18
Identities = 37/80 (46%), Positives = 60/80 (75%)
Frame = +3
Query: 492 DFEARRKDHIAHFILRLAYCRTEELRRWFIARELELFKMRFAVMRGEAVEVFFKLNNLCY 671
++E RR+DHI+HFILRLAYC++EELRRWFI +E++L + RF+++ + ++ F K + L +
Sbjct: 92 EYEPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQF 151
Query: 672 TTISEDEKNEVIQNLIESTP 731
IS++EK Q ++ S+P
Sbjct: 152 EAISDEEKTLREQEIVASSP 171
Score = 44.4 bits (100), Expect = 5e-04
Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +2
Query: 203 RKSTKTPATGNQFEL-YPHDLQLYKIPPVENITLQEFETLALERV 334
RK K G+Q YPH LQ Y PP ENI+L EFE LA++RV
Sbjct: 6 RKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRV 50
>BC017833-1|AAH17833.1| 158|Homo sapiens PRIM2A protein protein.
Length = 158
Score = 79.4 bits (187), Expect = 2e-14
Identities = 31/64 (48%), Positives = 50/64 (78%)
Frame = +3
Query: 492 DFEARRKDHIAHFILRLAYCRTEELRRWFIARELELFKMRFAVMRGEAVEVFFKLNNLCY 671
++E RR+DHI+HFILRLAYC++EELRRWFI +E++L + RF+++ + ++ F K + L +
Sbjct: 92 EYEPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQF 151
Query: 672 TTIS 683
+S
Sbjct: 152 EAVS 155
Score = 44.4 bits (100), Expect = 5e-04
Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +2
Query: 203 RKSTKTPATGNQFEL-YPHDLQLYKIPPVENITLQEFETLALERV 334
RK K G+Q YPH LQ Y PP ENI+L EFE LA++RV
Sbjct: 6 RKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRV 50
>AL162579-1|CAH73686.1| 158|Homo sapiens primase, polypeptide 2A,
58kDa protein.
Length = 158
Score = 79.4 bits (187), Expect = 2e-14
Identities = 31/64 (48%), Positives = 50/64 (78%)
Frame = +3
Query: 492 DFEARRKDHIAHFILRLAYCRTEELRRWFIARELELFKMRFAVMRGEAVEVFFKLNNLCY 671
++E RR+DHI+HFILRLAYC++EELRRWFI +E++L + RF+++ + ++ F K + L +
Sbjct: 92 EYEPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQF 151
Query: 672 TTIS 683
+S
Sbjct: 152 EAVS 155
Score = 44.4 bits (100), Expect = 5e-04
Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +2
Query: 203 RKSTKTPATGNQFEL-YPHDLQLYKIPPVENITLQEFETLALERV 334
RK K G+Q YPH LQ Y PP ENI+L EFE LA++RV
Sbjct: 6 RKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRV 50
>AL121975-1|CAI20534.1| 158|Homo sapiens primase, polypeptide 2A,
58kDa protein.
Length = 158
Score = 79.4 bits (187), Expect = 2e-14
Identities = 31/64 (48%), Positives = 50/64 (78%)
Frame = +3
Query: 492 DFEARRKDHIAHFILRLAYCRTEELRRWFIARELELFKMRFAVMRGEAVEVFFKLNNLCY 671
++E RR+DHI+HFILRLAYC++EELRRWFI +E++L + RF+++ + ++ F K + L +
Sbjct: 92 EYEPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQF 151
Query: 672 TTIS 683
+S
Sbjct: 152 EAVS 155
Score = 44.4 bits (100), Expect = 5e-04
Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +2
Query: 203 RKSTKTPATGNQFEL-YPHDLQLYKIPPVENITLQEFETLALERV 334
RK K G+Q YPH LQ Y PP ENI+L EFE LA++RV
Sbjct: 6 RKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRV 50
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,475,458
Number of Sequences: 237096
Number of extensions: 1476073
Number of successful extensions: 3184
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3184
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11104084400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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